Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahD and yahC are separated by 257 nucleotides yahC and yahB are separated by 91 nucleotides yahB and pdeL are separated by 41 nucleotides
NOLOHH_01860: yahD - Putative ankyrin repeat protein YahD, at 270,586 to 271,191
yahD
NOLOHH_01865: yahC - Uncharacterized protein YahC, at 271,449 to 271,946
yahC
NOLOHH_01870: yahB - Uncharacterized HTH-type transcriptional regulator YahB, at 272,038 to 272,970
yahB
NOLOHH_01875: pdeL - Cyclic di-GMP phosphodiesterase PdeL, at 273,012 to 274,100
pdeL
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.092 kb on + strand, within yahD at 271.342 kb on + strand at 271.342 kb on + strand at 271.343 kb on - strand at 271.395 kb on + strand at 271.408 kb on + strand at 271.408 kb on + strand at 271.408 kb on + strand at 271.408 kb on + strand at 271.408 kb on + strand at 271.408 kb on + strand at 271.409 kb on - strand at 271.409 kb on - strand at 271.409 kb on - strand at 271.409 kb on - strand at 271.414 kb on + strand at 271.546 kb on + strand, within yahC at 271.546 kb on + strand, within yahC at 271.635 kb on + strand, within yahC at 271.635 kb on + strand, within yahC at 271.635 kb on + strand, within yahC at 271.635 kb on + strand, within yahC at 271.636 kb on - strand, within yahC at 271.727 kb on + strand, within yahC at 271.885 kb on + strand, within yahC at 272.015 kb on + strand at 272.016 kb on - strand at 272.019 kb on + strand at 272.106 kb on + strand at 272.146 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.150 kb on - strand, within yahB at 272.236 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.298 kb on + strand, within yahB at 272.301 kb on + strand, within yahB at 272.316 kb on - strand, within yahB at 272.337 kb on + strand, within yahB at 272.337 kb on + strand, within yahB at 272.341 kb on - strand, within yahB at 272.341 kb on - strand, within yahB at 272.353 kb on + strand, within yahB at 272.356 kb on - strand, within yahB at 272.382 kb on - strand, within yahB at 272.382 kb on - strand, within yahB at 272.437 kb on + strand, within yahB at 272.438 kb on - strand, within yahB at 272.460 kb on + strand, within yahB at 272.463 kb on + strand, within yahB at 272.464 kb on - strand, within yahB at 272.527 kb on + strand, within yahB at 272.528 kb on - strand, within yahB at 272.626 kb on + strand, within yahB at 272.631 kb on + strand, within yahB at 272.634 kb on + strand, within yahB at 272.635 kb on - strand, within yahB at 272.635 kb on - strand, within yahB at 272.635 kb on - strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.638 kb on - strand, within yahB at 272.665 kb on - strand, within yahB at 272.668 kb on - strand, within yahB at 272.776 kb on + strand, within yahB at 272.776 kb on + strand, within yahB at 272.777 kb on - strand, within yahB at 272.777 kb on - strand, within yahB at 272.931 kb on - strand at 272.941 kb on + strand at 272.941 kb on + strand at 272.941 kb on + strand at 272.942 kb on - strand at 272.968 kb on + strand at 272.969 kb on - strand at 273.044 kb on + strand at 273.051 kb on - strand at 273.074 kb on - strand at 273.079 kb on + strand at 273.079 kb on + strand at 273.086 kb on + strand at 273.114 kb on + strand at 273.115 kb on - strand at 273.155 kb on + strand, within pdeL at 273.177 kb on + strand, within pdeL at 273.201 kb on - strand, within pdeL at 273.201 kb on - strand, within pdeL at 273.329 kb on + strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.358 kb on - strand, within pdeL at 273.386 kb on + strand, within pdeL at 273.426 kb on - strand, within pdeL at 273.588 kb on + strand, within pdeL at 273.589 kb on - strand, within pdeL at 273.597 kb on - strand, within pdeL at 273.675 kb on + strand, within pdeL at 273.783 kb on - strand, within pdeL at 273.881 kb on + strand, within pdeL at 273.881 kb on + strand, within pdeL at 273.882 kb on - strand, within pdeL at 273.884 kb on + strand, within pdeL at 273.885 kb on - strand, within pdeL at 273.911 kb on - strand, within pdeL
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 271,092 + yahD NOLOHH_01860 0.83 +0.2 271,342 + +1.8 271,342 + +0.8 271,343 - -0.2 271,395 + +0.0 271,408 + +0.7 271,408 + -0.6 271,408 + +0.3 271,408 + -0.0 271,408 + +0.1 271,408 + +0.7 271,409 - -0.4 271,409 - +0.5 271,409 - -0.6 271,409 - -0.9 271,414 + +1.1 271,546 + yahC NOLOHH_01865 0.19 -0.6 271,546 + yahC NOLOHH_01865 0.19 -0.6 271,635 + yahC NOLOHH_01865 0.37 -0.2 271,635 + yahC NOLOHH_01865 0.37 +1.4 271,635 + yahC NOLOHH_01865 0.37 -0.6 271,635 + yahC NOLOHH_01865 0.37 +0.1 271,636 - yahC NOLOHH_01865 0.38 -0.2 271,727 + yahC NOLOHH_01865 0.56 +0.6 271,885 + yahC NOLOHH_01865 0.88 -0.1 272,015 + +0.3 272,016 - +1.4 272,019 + +0.4 272,106 + +0.5 272,146 + yahB NOLOHH_01870 0.12 -1.9 272,149 + yahB NOLOHH_01870 0.12 -0.3 272,149 + yahB NOLOHH_01870 0.12 +0.7 272,149 + yahB NOLOHH_01870 0.12 +0.4 272,149 + yahB NOLOHH_01870 0.12 +0.7 272,149 + yahB NOLOHH_01870 0.12 +0.3 272,150 - yahB NOLOHH_01870 0.12 +2.0 272,236 + yahB NOLOHH_01870 0.21 +0.4 272,294 + yahB NOLOHH_01870 0.27 +0.4 272,294 + yahB NOLOHH_01870 0.27 +0.2 272,294 + yahB NOLOHH_01870 0.27 -0.6 272,294 + yahB NOLOHH_01870 0.27 +1.4 272,294 + yahB NOLOHH_01870 0.27 -0.6 272,294 + yahB NOLOHH_01870 0.27 +0.7 272,294 + yahB NOLOHH_01870 0.27 -0.4 272,294 + yahB NOLOHH_01870 0.27 -0.4 272,295 - yahB NOLOHH_01870 0.28 +0.1 272,295 - yahB NOLOHH_01870 0.28 -1.4 272,295 - yahB NOLOHH_01870 0.28 -0.6 272,295 - yahB NOLOHH_01870 0.28 -0.4 272,295 - yahB NOLOHH_01870 0.28 -0.9 272,298 + yahB NOLOHH_01870 0.28 -0.7 272,301 + yahB NOLOHH_01870 0.28 -0.6 272,316 - yahB NOLOHH_01870 0.30 +0.7 272,337 + yahB NOLOHH_01870 0.32 +0.8 272,337 + yahB NOLOHH_01870 0.32 +2.4 272,341 - yahB NOLOHH_01870 0.32 +0.4 272,341 - yahB NOLOHH_01870 0.32 +1.0 272,353 + yahB NOLOHH_01870 0.34 +0.6 272,356 - yahB NOLOHH_01870 0.34 -0.3 272,382 - yahB NOLOHH_01870 0.37 -0.0 272,382 - yahB NOLOHH_01870 0.37 +0.4 272,437 + yahB NOLOHH_01870 0.43 -0.9 272,438 - yahB NOLOHH_01870 0.43 -1.8 272,460 + yahB NOLOHH_01870 0.45 -0.2 272,463 + yahB NOLOHH_01870 0.46 +1.3 272,464 - yahB NOLOHH_01870 0.46 +0.6 272,527 + yahB NOLOHH_01870 0.52 -0.2 272,528 - yahB NOLOHH_01870 0.53 -0.6 272,626 + yahB NOLOHH_01870 0.63 -1.2 272,631 + yahB NOLOHH_01870 0.64 +0.4 272,634 + yahB NOLOHH_01870 0.64 +0.4 272,635 - yahB NOLOHH_01870 0.64 -0.9 272,635 - yahB NOLOHH_01870 0.64 +1.3 272,635 - yahB NOLOHH_01870 0.64 -1.3 272,637 + yahB NOLOHH_01870 0.64 -0.4 272,637 + yahB NOLOHH_01870 0.64 -1.2 272,637 + yahB NOLOHH_01870 0.64 +1.0 272,637 + yahB NOLOHH_01870 0.64 +0.1 272,638 - yahB NOLOHH_01870 0.64 +0.2 272,665 - yahB NOLOHH_01870 0.67 -1.2 272,668 - yahB NOLOHH_01870 0.68 -0.4 272,776 + yahB NOLOHH_01870 0.79 +0.4 272,776 + yahB NOLOHH_01870 0.79 -1.2 272,777 - yahB NOLOHH_01870 0.79 -0.6 272,777 - yahB NOLOHH_01870 0.79 +1.4 272,931 - -0.9 272,941 + +0.7 272,941 + -0.8 272,941 + -0.0 272,942 - +3.4 272,968 + +1.7 272,969 - +0.2 273,044 + +0.1 273,051 - -0.6 273,074 - -0.6 273,079 + -0.9 273,079 + -0.9 273,086 + +0.4 273,114 + -0.1 273,115 - -0.8 273,155 + pdeL NOLOHH_01875 0.13 +0.6 273,177 + pdeL NOLOHH_01875 0.15 -0.6 273,201 - pdeL NOLOHH_01875 0.17 +0.4 273,201 - pdeL NOLOHH_01875 0.17 -1.2 273,329 + pdeL NOLOHH_01875 0.29 -1.8 273,330 - pdeL NOLOHH_01875 0.29 +1.0 273,330 - pdeL NOLOHH_01875 0.29 +0.7 273,330 - pdeL NOLOHH_01875 0.29 -0.0 273,330 - pdeL NOLOHH_01875 0.29 +1.4 273,358 - pdeL NOLOHH_01875 0.32 -0.2 273,386 + pdeL NOLOHH_01875 0.34 +1.2 273,426 - pdeL NOLOHH_01875 0.38 +0.8 273,588 + pdeL NOLOHH_01875 0.53 -0.5 273,589 - pdeL NOLOHH_01875 0.53 -0.3 273,597 - pdeL NOLOHH_01875 0.54 +0.4 273,675 + pdeL NOLOHH_01875 0.61 +0.4 273,783 - pdeL NOLOHH_01875 0.71 -0.8 273,881 + pdeL NOLOHH_01875 0.80 +0.4 273,881 + pdeL NOLOHH_01875 0.80 +0.4 273,882 - pdeL NOLOHH_01875 0.80 -0.8 273,884 + pdeL NOLOHH_01875 0.80 +2.1 273,885 - pdeL NOLOHH_01875 0.80 -0.7 273,911 - pdeL NOLOHH_01875 0.83 +0.6
Or see this region's nucleotide sequence