Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiO and frmR are separated by 184 nucleotides frmR and frmA are separated by 34 nucleotides frmA and fghA are separated by 92 nucleotides
NOLOHH_01640: yaiO - Outer membrane protein YaiO, at 222,590 to 223,363
yaiO
NOLOHH_01645: frmR - formaldehyde-responsive transcriptional repressor FrmR, at 223,548 to 223,823
frmR
NOLOHH_01650: frmA - S-(hydroxymethyl)glutathione dehydrogenase, at 223,858 to 224,967
frmA
NOLOHH_01655: fghA - S-formylglutathione hydrolase, at 225,060 to 225,893
fghA
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.979 kb on + strand, within yaiO at 222.980 kb on - strand, within yaiO at 222.980 kb on - strand, within yaiO at 222.987 kb on - strand, within yaiO at 222.987 kb on - strand, within yaiO at 223.031 kb on + strand, within yaiO at 223.031 kb on + strand, within yaiO at 223.032 kb on - strand, within yaiO at 223.032 kb on - strand, within yaiO at 223.033 kb on + strand, within yaiO at 223.064 kb on - strand, within yaiO at 223.070 kb on + strand, within yaiO at 223.093 kb on + strand, within yaiO at 223.097 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.147 kb on + strand, within yaiO at 223.155 kb on + strand, within yaiO at 223.155 kb on + strand, within yaiO at 223.156 kb on - strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.187 kb on + strand, within yaiO at 223.187 kb on + strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.267 kb on + strand, within yaiO at 223.267 kb on + strand, within yaiO at 223.268 kb on - strand, within yaiO at 223.288 kb on + strand at 223.289 kb on - strand at 223.319 kb on + strand at 223.322 kb on - strand at 223.475 kb on - strand at 223.477 kb on + strand at 223.478 kb on - strand at 223.501 kb on + strand at 223.556 kb on + strand at 223.660 kb on + strand, within frmR at 223.758 kb on + strand, within frmR at 223.981 kb on - strand, within frmA at 223.992 kb on + strand, within frmA at 223.992 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.120 kb on - strand, within frmA at 224.166 kb on + strand, within frmA at 224.236 kb on + strand, within frmA at 224.237 kb on - strand, within frmA at 224.254 kb on + strand, within frmA at 224.254 kb on + strand, within frmA at 224.260 kb on + strand, within frmA at 224.260 kb on + strand, within frmA at 224.261 kb on - strand, within frmA at 224.261 kb on - strand, within frmA at 224.287 kb on + strand, within frmA at 224.288 kb on - strand, within frmA at 224.403 kb on + strand, within frmA at 224.403 kb on + strand, within frmA at 224.403 kb on + strand, within frmA at 224.404 kb on - strand, within frmA at 224.404 kb on - strand, within frmA at 224.404 kb on - strand, within frmA at 224.404 kb on - strand, within frmA at 224.579 kb on - strand, within frmA at 224.592 kb on + strand, within frmA at 224.593 kb on - strand, within frmA at 224.907 kb on + strand at 224.955 kb on - strand at 224.979 kb on + strand at 225.008 kb on + strand at 225.008 kb on + strand at 225.008 kb on + strand at 225.009 kb on - strand at 225.009 kb on - strand at 225.009 kb on - strand at 225.012 kb on - strand at 225.012 kb on - strand at 225.051 kb on + strand at 225.156 kb on + strand, within fghA at 225.156 kb on + strand, within fghA at 225.240 kb on - strand, within fghA at 225.242 kb on + strand, within fghA at 225.242 kb on + strand, within fghA at 225.281 kb on + strand, within fghA at 225.282 kb on - strand, within fghA at 225.403 kb on - strand, within fghA at 225.403 kb on - strand, within fghA at 225.411 kb on + strand, within fghA at 225.411 kb on + strand, within fghA at 225.412 kb on - strand, within fghA at 225.412 kb on - strand, within fghA at 225.412 kb on - strand, within fghA at 225.417 kb on + strand, within fghA at 225.417 kb on + strand, within fghA at 225.417 kb on + strand, within fghA at 225.417 kb on + strand, within fghA at 225.417 kb on + strand, within fghA at 225.418 kb on - strand, within fghA at 225.418 kb on - strand, within fghA at 225.418 kb on - strand, within fghA at 225.418 kb on - strand, within fghA at 225.418 kb on - strand, within fghA at 225.526 kb on + strand, within fghA at 225.531 kb on - strand, within fghA at 225.543 kb on + strand, within fghA at 225.543 kb on + strand, within fghA at 225.544 kb on - strand, within fghA at 225.544 kb on - strand, within fghA at 225.618 kb on + strand, within fghA at 225.619 kb on - strand, within fghA at 225.632 kb on + strand, within fghA at 225.651 kb on + strand, within fghA at 225.652 kb on - strand, within fghA at 225.669 kb on - strand, within fghA at 225.782 kb on + strand, within fghA at 225.783 kb on - strand, within fghA at 225.813 kb on + strand at 225.825 kb on + strand at 225.828 kb on + strand at 225.828 kb on + strand at 225.857 kb on + strand at 225.858 kb on - strand at 225.894 kb on + strand at 225.895 kb on - strand at 225.897 kb on + strand at 225.898 kb on - strand at 225.898 kb on - strand at 225.898 kb on - strand at 225.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 222,979 + yaiO NOLOHH_01640 0.50 -0.4 222,980 - yaiO NOLOHH_01640 0.50 +0.4 222,980 - yaiO NOLOHH_01640 0.50 +0.8 222,987 - yaiO NOLOHH_01640 0.51 +0.8 222,987 - yaiO NOLOHH_01640 0.51 +1.2 223,031 + yaiO NOLOHH_01640 0.57 -1.2 223,031 + yaiO NOLOHH_01640 0.57 +0.4 223,032 - yaiO NOLOHH_01640 0.57 +0.7 223,032 - yaiO NOLOHH_01640 0.57 -0.2 223,033 + yaiO NOLOHH_01640 0.57 -0.0 223,064 - yaiO NOLOHH_01640 0.61 +0.4 223,070 + yaiO NOLOHH_01640 0.62 -2.2 223,093 + yaiO NOLOHH_01640 0.65 -0.2 223,097 + yaiO NOLOHH_01640 0.66 +0.1 223,099 + yaiO NOLOHH_01640 0.66 -0.9 223,099 + yaiO NOLOHH_01640 0.66 +1.4 223,099 + yaiO NOLOHH_01640 0.66 +0.7 223,099 + yaiO NOLOHH_01640 0.66 +0.2 223,147 + yaiO NOLOHH_01640 0.72 -0.4 223,155 + yaiO NOLOHH_01640 0.73 -0.5 223,155 + yaiO NOLOHH_01640 0.73 -0.2 223,156 - yaiO NOLOHH_01640 0.73 +0.1 223,181 + yaiO NOLOHH_01640 0.76 -0.1 223,181 + yaiO NOLOHH_01640 0.76 +1.3 223,181 + yaiO NOLOHH_01640 0.76 -0.9 223,182 - yaiO NOLOHH_01640 0.76 +0.7 223,182 - yaiO NOLOHH_01640 0.76 +2.0 223,182 - yaiO NOLOHH_01640 0.76 +0.4 223,187 + yaiO NOLOHH_01640 0.77 -1.5 223,187 + yaiO NOLOHH_01640 0.77 -0.2 223,188 - yaiO NOLOHH_01640 0.77 -1.6 223,188 - yaiO NOLOHH_01640 0.77 -1.2 223,188 - yaiO NOLOHH_01640 0.77 -1.9 223,267 + yaiO NOLOHH_01640 0.87 -0.4 223,267 + yaiO NOLOHH_01640 0.87 -0.1 223,268 - yaiO NOLOHH_01640 0.88 -0.4 223,288 + +1.1 223,289 - -0.1 223,319 + -0.5 223,322 - -0.2 223,475 - +0.7 223,477 + -0.3 223,478 - +0.8 223,501 + -0.9 223,556 + +0.8 223,660 + frmR NOLOHH_01645 0.41 +0.2 223,758 + frmR NOLOHH_01645 0.76 -0.7 223,981 - frmA NOLOHH_01650 0.11 +0.4 223,992 + frmA NOLOHH_01650 0.12 -0.9 223,992 + frmA NOLOHH_01650 0.12 -1.1 224,021 + frmA NOLOHH_01650 0.15 -0.0 224,021 + frmA NOLOHH_01650 0.15 -1.1 224,021 + frmA NOLOHH_01650 0.15 +0.8 224,120 - frmA NOLOHH_01650 0.24 -0.2 224,166 + frmA NOLOHH_01650 0.28 -1.6 224,236 + frmA NOLOHH_01650 0.34 -0.0 224,237 - frmA NOLOHH_01650 0.34 +1.4 224,254 + frmA NOLOHH_01650 0.36 -0.2 224,254 + frmA NOLOHH_01650 0.36 +0.1 224,260 + frmA NOLOHH_01650 0.36 -1.6 224,260 + frmA NOLOHH_01650 0.36 -0.2 224,261 - frmA NOLOHH_01650 0.36 -1.2 224,261 - frmA NOLOHH_01650 0.36 +0.1 224,287 + frmA NOLOHH_01650 0.39 +1.0 224,288 - frmA NOLOHH_01650 0.39 +0.4 224,403 + frmA NOLOHH_01650 0.49 +0.4 224,403 + frmA NOLOHH_01650 0.49 -0.2 224,403 + frmA NOLOHH_01650 0.49 +0.9 224,404 - frmA NOLOHH_01650 0.49 +0.4 224,404 - frmA NOLOHH_01650 0.49 +0.2 224,404 - frmA NOLOHH_01650 0.49 -0.4 224,404 - frmA NOLOHH_01650 0.49 -0.9 224,579 - frmA NOLOHH_01650 0.65 -1.4 224,592 + frmA NOLOHH_01650 0.66 +1.1 224,593 - frmA NOLOHH_01650 0.66 +0.4 224,907 + -1.5 224,955 - +0.4 224,979 + -0.6 225,008 + +0.3 225,008 + -0.6 225,008 + +0.0 225,009 - -0.3 225,009 - +0.4 225,009 - +1.4 225,012 - +1.4 225,012 - +0.1 225,051 + +0.6 225,156 + fghA NOLOHH_01655 0.12 +0.1 225,156 + fghA NOLOHH_01655 0.12 -1.4 225,240 - fghA NOLOHH_01655 0.22 -0.3 225,242 + fghA NOLOHH_01655 0.22 +0.4 225,242 + fghA NOLOHH_01655 0.22 -1.2 225,281 + fghA NOLOHH_01655 0.26 -0.6 225,282 - fghA NOLOHH_01655 0.27 +0.3 225,403 - fghA NOLOHH_01655 0.41 +0.2 225,403 - fghA NOLOHH_01655 0.41 -0.0 225,411 + fghA NOLOHH_01655 0.42 +0.1 225,411 + fghA NOLOHH_01655 0.42 +0.4 225,412 - fghA NOLOHH_01655 0.42 +0.2 225,412 - fghA NOLOHH_01655 0.42 -0.8 225,412 - fghA NOLOHH_01655 0.42 +1.4 225,417 + fghA NOLOHH_01655 0.43 -1.0 225,417 + fghA NOLOHH_01655 0.43 -0.6 225,417 + fghA NOLOHH_01655 0.43 +1.4 225,417 + fghA NOLOHH_01655 0.43 -0.3 225,417 + fghA NOLOHH_01655 0.43 -0.8 225,418 - fghA NOLOHH_01655 0.43 -0.2 225,418 - fghA NOLOHH_01655 0.43 -1.6 225,418 - fghA NOLOHH_01655 0.43 +1.0 225,418 - fghA NOLOHH_01655 0.43 -1.8 225,418 - fghA NOLOHH_01655 0.43 +0.7 225,526 + fghA NOLOHH_01655 0.56 +0.6 225,531 - fghA NOLOHH_01655 0.56 +1.4 225,543 + fghA NOLOHH_01655 0.58 +1.1 225,543 + fghA NOLOHH_01655 0.58 +0.8 225,544 - fghA NOLOHH_01655 0.58 +1.0 225,544 - fghA NOLOHH_01655 0.58 -0.4 225,618 + fghA NOLOHH_01655 0.67 -0.9 225,619 - fghA NOLOHH_01655 0.67 -0.6 225,632 + fghA NOLOHH_01655 0.69 +1.1 225,651 + fghA NOLOHH_01655 0.71 +0.6 225,652 - fghA NOLOHH_01655 0.71 -0.2 225,669 - fghA NOLOHH_01655 0.73 +1.1 225,782 + fghA NOLOHH_01655 0.87 +0.5 225,783 - fghA NOLOHH_01655 0.87 +1.7 225,813 + -0.6 225,825 + -0.3 225,828 + +1.0 225,828 + +0.7 225,857 + +0.0 225,858 - +0.4 225,894 + +1.4 225,895 - +0.4 225,897 + +2.7 225,898 - +1.1 225,898 - -0.6 225,898 - +0.1 225,898 - +0.6
Or see this region's nucleotide sequence