Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiP and yaiO are separated by 560 nucleotides yaiO and frmR are separated by 184 nucleotides frmR and frmA are separated by 34 nucleotides
NOLOHH_01635: yaiP - Uncharacterized glycosyltransferase YaiP, at 220,833 to 222,029
yaiP
NOLOHH_01640: yaiO - Outer membrane protein YaiO, at 222,590 to 223,363
yaiO
NOLOHH_01645: frmR - formaldehyde-responsive transcriptional repressor FrmR, at 223,548 to 223,823
frmR
NOLOHH_01650: frmA - S-(hydroxymethyl)glutathione dehydrogenase, at 223,858 to 224,967
frmA
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.619 kb on - strand, within yaiP at 221.862 kb on + strand, within yaiP at 221.863 kb on - strand, within yaiP at 221.863 kb on - strand, within yaiP at 221.863 kb on - strand, within yaiP at 222.115 kb on - strand at 222.338 kb on + strand at 222.338 kb on + strand at 222.339 kb on - strand at 222.418 kb on - strand at 222.431 kb on - strand at 222.458 kb on + strand at 222.576 kb on + strand at 222.642 kb on - strand at 222.651 kb on + strand at 222.710 kb on - strand, within yaiO at 222.719 kb on + strand, within yaiO at 222.720 kb on - strand, within yaiO at 222.838 kb on + strand, within yaiO at 222.839 kb on - strand, within yaiO at 222.847 kb on + strand, within yaiO at 222.979 kb on + strand, within yaiO at 222.980 kb on - strand, within yaiO at 222.980 kb on - strand, within yaiO at 222.987 kb on - strand, within yaiO at 222.987 kb on - strand, within yaiO at 223.031 kb on + strand, within yaiO at 223.031 kb on + strand, within yaiO at 223.032 kb on - strand, within yaiO at 223.032 kb on - strand, within yaiO at 223.033 kb on + strand, within yaiO at 223.064 kb on - strand, within yaiO at 223.070 kb on + strand, within yaiO at 223.093 kb on + strand, within yaiO at 223.097 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.099 kb on + strand, within yaiO at 223.147 kb on + strand, within yaiO at 223.155 kb on + strand, within yaiO at 223.155 kb on + strand, within yaiO at 223.156 kb on - strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.181 kb on + strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.182 kb on - strand, within yaiO at 223.187 kb on + strand, within yaiO at 223.187 kb on + strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.188 kb on - strand, within yaiO at 223.267 kb on + strand, within yaiO at 223.267 kb on + strand, within yaiO at 223.268 kb on - strand, within yaiO at 223.288 kb on + strand at 223.289 kb on - strand at 223.319 kb on + strand at 223.322 kb on - strand at 223.475 kb on - strand at 223.477 kb on + strand at 223.478 kb on - strand at 223.501 kb on + strand at 223.556 kb on + strand at 223.660 kb on + strand, within frmR at 223.758 kb on + strand, within frmR at 223.981 kb on - strand, within frmA at 223.992 kb on + strand, within frmA at 223.992 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.021 kb on + strand, within frmA at 224.120 kb on - strand, within frmA at 224.166 kb on + strand, within frmA at 224.236 kb on + strand, within frmA at 224.237 kb on - strand, within frmA at 224.254 kb on + strand, within frmA at 224.254 kb on + strand, within frmA at 224.260 kb on + strand, within frmA at 224.260 kb on + strand, within frmA at 224.261 kb on - strand, within frmA at 224.261 kb on - strand, within frmA at 224.287 kb on + strand, within frmA at 224.288 kb on - strand, within frmA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 221,619 - yaiP NOLOHH_01635 0.66 -0.6 221,862 + yaiP NOLOHH_01635 0.86 +0.3 221,863 - yaiP NOLOHH_01635 0.86 +2.7 221,863 - yaiP NOLOHH_01635 0.86 +1.0 221,863 - yaiP NOLOHH_01635 0.86 +1.4 222,115 - -0.6 222,338 + +0.8 222,338 + -0.7 222,339 - +1.0 222,418 - +2.0 222,431 - +1.0 222,458 + +0.6 222,576 + +1.0 222,642 - -0.1 222,651 + +0.4 222,710 - yaiO NOLOHH_01640 0.16 -0.2 222,719 + yaiO NOLOHH_01640 0.17 +1.4 222,720 - yaiO NOLOHH_01640 0.17 +1.4 222,838 + yaiO NOLOHH_01640 0.32 -0.2 222,839 - yaiO NOLOHH_01640 0.32 +1.0 222,847 + yaiO NOLOHH_01640 0.33 +0.0 222,979 + yaiO NOLOHH_01640 0.50 -0.4 222,980 - yaiO NOLOHH_01640 0.50 +0.4 222,980 - yaiO NOLOHH_01640 0.50 +0.8 222,987 - yaiO NOLOHH_01640 0.51 +0.8 222,987 - yaiO NOLOHH_01640 0.51 +1.2 223,031 + yaiO NOLOHH_01640 0.57 -1.2 223,031 + yaiO NOLOHH_01640 0.57 +0.4 223,032 - yaiO NOLOHH_01640 0.57 +0.7 223,032 - yaiO NOLOHH_01640 0.57 -0.2 223,033 + yaiO NOLOHH_01640 0.57 -0.0 223,064 - yaiO NOLOHH_01640 0.61 +0.4 223,070 + yaiO NOLOHH_01640 0.62 -2.2 223,093 + yaiO NOLOHH_01640 0.65 -0.2 223,097 + yaiO NOLOHH_01640 0.66 +0.1 223,099 + yaiO NOLOHH_01640 0.66 -0.9 223,099 + yaiO NOLOHH_01640 0.66 +1.4 223,099 + yaiO NOLOHH_01640 0.66 +0.7 223,099 + yaiO NOLOHH_01640 0.66 +0.2 223,147 + yaiO NOLOHH_01640 0.72 -0.4 223,155 + yaiO NOLOHH_01640 0.73 -0.5 223,155 + yaiO NOLOHH_01640 0.73 -0.2 223,156 - yaiO NOLOHH_01640 0.73 +0.1 223,181 + yaiO NOLOHH_01640 0.76 -0.1 223,181 + yaiO NOLOHH_01640 0.76 +1.3 223,181 + yaiO NOLOHH_01640 0.76 -0.9 223,182 - yaiO NOLOHH_01640 0.76 +0.7 223,182 - yaiO NOLOHH_01640 0.76 +2.0 223,182 - yaiO NOLOHH_01640 0.76 +0.4 223,187 + yaiO NOLOHH_01640 0.77 -1.5 223,187 + yaiO NOLOHH_01640 0.77 -0.2 223,188 - yaiO NOLOHH_01640 0.77 -1.6 223,188 - yaiO NOLOHH_01640 0.77 -1.2 223,188 - yaiO NOLOHH_01640 0.77 -1.9 223,267 + yaiO NOLOHH_01640 0.87 -0.4 223,267 + yaiO NOLOHH_01640 0.87 -0.1 223,268 - yaiO NOLOHH_01640 0.88 -0.4 223,288 + +1.1 223,289 - -0.1 223,319 + -0.5 223,322 - -0.2 223,475 - +0.7 223,477 + -0.3 223,478 - +0.8 223,501 + -0.9 223,556 + +0.8 223,660 + frmR NOLOHH_01645 0.41 +0.2 223,758 + frmR NOLOHH_01645 0.76 -0.7 223,981 - frmA NOLOHH_01650 0.11 +0.4 223,992 + frmA NOLOHH_01650 0.12 -0.9 223,992 + frmA NOLOHH_01650 0.12 -1.1 224,021 + frmA NOLOHH_01650 0.15 -0.0 224,021 + frmA NOLOHH_01650 0.15 -1.1 224,021 + frmA NOLOHH_01650 0.15 +0.8 224,120 - frmA NOLOHH_01650 0.24 -0.2 224,166 + frmA NOLOHH_01650 0.28 -1.6 224,236 + frmA NOLOHH_01650 0.34 -0.0 224,237 - frmA NOLOHH_01650 0.34 +1.4 224,254 + frmA NOLOHH_01650 0.36 -0.2 224,254 + frmA NOLOHH_01650 0.36 +0.1 224,260 + frmA NOLOHH_01650 0.36 -1.6 224,260 + frmA NOLOHH_01650 0.36 -0.2 224,261 - frmA NOLOHH_01650 0.36 -1.2 224,261 - frmA NOLOHH_01650 0.36 +0.1 224,287 + frmA NOLOHH_01650 0.39 +1.0 224,288 - frmA NOLOHH_01650 0.39 +0.4
Or see this region's nucleotide sequence