Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroL and yaiI are separated by 182 nucleotides yaiI and proC are separated by 119 nucleotides proC and adrA are separated by 16 nucleotides
NOLOHH_01525: aroL - shikimate kinase AroL, at 199,101 to 199,625
aroL
NOLOHH_01530: yaiI - YaiI/YqxD family protein, at 199,808 to 200,266
yaiI
NOLOHH_01535: proC - pyrroline-5-carboxylate reductase, at 200,386 to 201,195
proC
NOLOHH_01540: adrA - diguanylate cyclase AdrA, at 201,212 to 202,327
adrA
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 199.397 kb on + strand, within aroL at 199.499 kb on + strand, within aroL at 199.500 kb on - strand, within aroL at 199.583 kb on + strand at 199.584 kb on - strand at 199.642 kb on + strand at 199.642 kb on + strand at 199.760 kb on - strand at 199.762 kb on + strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.764 kb on + strand at 199.765 kb on - strand at 199.774 kb on + strand at 199.775 kb on - strand at 199.888 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.927 kb on + strand, within yaiI at 199.978 kb on - strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.041 kb on + strand, within yaiI at 200.041 kb on + strand, within yaiI at 200.042 kb on - strand, within yaiI at 200.042 kb on - strand, within yaiI at 200.135 kb on - strand, within yaiI at 200.135 kb on - strand, within yaiI at 200.157 kb on - strand, within yaiI at 200.157 kb on - strand, within yaiI at 200.195 kb on - strand, within yaiI at 200.195 kb on - strand, within yaiI at 200.225 kb on - strand at 200.225 kb on - strand at 200.228 kb on + strand at 200.229 kb on - strand at 200.229 kb on - strand at 200.267 kb on - strand at 200.287 kb on - strand at 200.295 kb on - strand at 200.322 kb on + strand at 200.322 kb on + strand at 200.333 kb on - strand at 200.407 kb on - strand at 200.488 kb on + strand, within proC at 200.488 kb on + strand, within proC at 200.489 kb on - strand, within proC at 200.489 kb on - strand, within proC at 200.489 kb on - strand, within proC at 200.616 kb on + strand, within proC at 200.616 kb on + strand, within proC at 200.649 kb on + strand, within proC at 200.670 kb on + strand, within proC at 200.814 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 201.066 kb on + strand, within proC at 201.066 kb on + strand, within proC at 201.162 kb on + strand at 201.258 kb on + strand at 201.258 kb on + strand at 201.259 kb on - strand at 201.334 kb on + strand, within adrA at 201.335 kb on - strand, within adrA at 201.335 kb on - strand, within adrA at 201.497 kb on - strand, within adrA at 201.497 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.629 kb on - strand, within adrA at 201.644 kb on + strand, within adrA at 201.649 kb on + strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.672 kb on + strand, within adrA at 201.673 kb on - strand, within adrA at 201.721 kb on + strand, within adrA at 201.721 kb on + strand, within adrA at 201.722 kb on - strand, within adrA at 201.788 kb on - strand, within adrA at 201.848 kb on - strand, within adrA at 201.940 kb on + strand, within adrA at 202.008 kb on - strand, within adrA at 202.030 kb on - strand, within adrA at 202.079 kb on + strand, within adrA at 202.079 kb on + strand, within adrA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 199,397 + aroL NOLOHH_01525 0.56 +1.4 199,499 + aroL NOLOHH_01525 0.76 +1.4 199,500 - aroL NOLOHH_01525 0.76 +1.1 199,583 + -0.2 199,584 - +1.8 199,642 + -0.4 199,642 + -0.0 199,760 - -0.5 199,762 + +1.5 199,763 - +0.2 199,763 - -1.1 199,763 - -0.4 199,763 - -0.2 199,764 + -0.9 199,765 - +0.0 199,774 + +0.4 199,775 - -0.6 199,888 + yaiI NOLOHH_01530 0.17 +0.3 199,922 + yaiI NOLOHH_01530 0.25 +0.2 199,922 + yaiI NOLOHH_01530 0.25 -1.6 199,922 + yaiI NOLOHH_01530 0.25 +1.2 199,922 + yaiI NOLOHH_01530 0.25 +0.4 199,922 + yaiI NOLOHH_01530 0.25 -0.4 199,922 + yaiI NOLOHH_01530 0.25 +1.4 199,923 - yaiI NOLOHH_01530 0.25 -0.0 199,923 - yaiI NOLOHH_01530 0.25 -0.0 199,923 - yaiI NOLOHH_01530 0.25 -0.8 199,927 + yaiI NOLOHH_01530 0.26 -1.9 199,978 - yaiI NOLOHH_01530 0.37 +0.8 200,039 + yaiI NOLOHH_01530 0.50 +1.4 200,039 + yaiI NOLOHH_01530 0.50 -1.2 200,039 + yaiI NOLOHH_01530 0.50 +0.7 200,039 + yaiI NOLOHH_01530 0.50 -1.2 200,040 - yaiI NOLOHH_01530 0.51 -1.0 200,040 - yaiI NOLOHH_01530 0.51 -0.0 200,040 - yaiI NOLOHH_01530 0.51 +0.4 200,040 - yaiI NOLOHH_01530 0.51 -1.6 200,040 - yaiI NOLOHH_01530 0.51 -0.8 200,040 - yaiI NOLOHH_01530 0.51 +1.3 200,041 + yaiI NOLOHH_01530 0.51 -0.0 200,041 + yaiI NOLOHH_01530 0.51 -0.9 200,042 - yaiI NOLOHH_01530 0.51 -0.5 200,042 - yaiI NOLOHH_01530 0.51 -0.5 200,135 - yaiI NOLOHH_01530 0.71 +0.1 200,135 - yaiI NOLOHH_01530 0.71 -0.0 200,157 - yaiI NOLOHH_01530 0.76 +0.5 200,157 - yaiI NOLOHH_01530 0.76 +2.0 200,195 - yaiI NOLOHH_01530 0.84 +0.2 200,195 - yaiI NOLOHH_01530 0.84 -0.1 200,225 - +0.1 200,225 - -0.3 200,228 + +1.1 200,229 - +1.0 200,229 - +0.4 200,267 - +0.1 200,287 - -0.6 200,295 - +0.9 200,322 + -0.5 200,322 + -0.1 200,333 - +0.3 200,407 - -2.6 200,488 + proC NOLOHH_01535 0.13 -0.3 200,488 + proC NOLOHH_01535 0.13 +0.1 200,489 - proC NOLOHH_01535 0.13 +0.4 200,489 - proC NOLOHH_01535 0.13 +0.7 200,489 - proC NOLOHH_01535 0.13 -0.3 200,616 + proC NOLOHH_01535 0.28 -0.3 200,616 + proC NOLOHH_01535 0.28 +1.4 200,649 + proC NOLOHH_01535 0.32 -1.2 200,670 + proC NOLOHH_01535 0.35 -0.2 200,814 + proC NOLOHH_01535 0.53 +0.4 200,861 + proC NOLOHH_01535 0.59 +0.4 200,861 + proC NOLOHH_01535 0.59 +1.6 200,861 + proC NOLOHH_01535 0.59 +1.8 200,921 + proC NOLOHH_01535 0.66 -1.6 200,921 + proC NOLOHH_01535 0.66 -0.6 200,921 + proC NOLOHH_01535 0.66 -1.4 200,925 + proC NOLOHH_01535 0.67 -0.2 200,925 + proC NOLOHH_01535 0.67 +0.7 200,925 + proC NOLOHH_01535 0.67 +1.8 200,925 + proC NOLOHH_01535 0.67 +3.0 200,925 + proC NOLOHH_01535 0.67 -0.3 200,926 - proC NOLOHH_01535 0.67 -0.2 200,926 - proC NOLOHH_01535 0.67 -0.9 200,926 - proC NOLOHH_01535 0.67 -0.6 200,926 - proC NOLOHH_01535 0.67 +1.0 200,926 - proC NOLOHH_01535 0.67 +0.4 201,066 + proC NOLOHH_01535 0.84 -0.4 201,066 + proC NOLOHH_01535 0.84 -0.6 201,162 + +0.4 201,258 + +0.4 201,258 + -0.6 201,259 - +0.2 201,334 + adrA NOLOHH_01540 0.11 +0.4 201,335 - adrA NOLOHH_01540 0.11 +0.9 201,335 - adrA NOLOHH_01540 0.11 +0.8 201,497 - adrA NOLOHH_01540 0.26 +0.4 201,497 - adrA NOLOHH_01540 0.26 -0.2 201,614 - adrA NOLOHH_01540 0.36 -0.9 201,614 - adrA NOLOHH_01540 0.36 +0.4 201,614 - adrA NOLOHH_01540 0.36 -0.9 201,629 - adrA NOLOHH_01540 0.37 +2.0 201,644 + adrA NOLOHH_01540 0.39 +0.0 201,649 + adrA NOLOHH_01540 0.39 +0.3 201,650 - adrA NOLOHH_01540 0.39 -0.8 201,650 - adrA NOLOHH_01540 0.39 -1.0 201,650 - adrA NOLOHH_01540 0.39 +0.4 201,650 - adrA NOLOHH_01540 0.39 -0.1 201,650 - adrA NOLOHH_01540 0.39 +0.4 201,650 - adrA NOLOHH_01540 0.39 +0.8 201,650 - adrA NOLOHH_01540 0.39 +1.1 201,672 + adrA NOLOHH_01540 0.41 +0.1 201,673 - adrA NOLOHH_01540 0.41 +0.2 201,721 + adrA NOLOHH_01540 0.46 -0.1 201,721 + adrA NOLOHH_01540 0.46 +0.8 201,722 - adrA NOLOHH_01540 0.46 -1.6 201,788 - adrA NOLOHH_01540 0.52 -0.3 201,848 - adrA NOLOHH_01540 0.57 +0.1 201,940 + adrA NOLOHH_01540 0.65 -0.9 202,008 - adrA NOLOHH_01540 0.71 +0.2 202,030 - adrA NOLOHH_01540 0.73 +0.4 202,079 + adrA NOLOHH_01540 0.78 -0.1 202,079 + adrA NOLOHH_01540 0.78 -1.2
Or see this region's nucleotide sequence