Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroM and yaiA are separated by 257 nucleotides yaiA and aroL are separated by 49 nucleotides aroL and yaiI are separated by 182 nucleotides
NOLOHH_01515: aroM - Protein AroM, at 197,925 to 198,602
aroM
NOLOHH_01520: yaiA - Uncharacterized protein YaiA, at 198,860 to 199,051
yaiA
NOLOHH_01525: aroL - shikimate kinase AroL, at 199,101 to 199,625
aroL
NOLOHH_01530: yaiI - YaiI/YqxD family protein, at 199,808 to 200,266
yaiI
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.883 kb on + strand at 197.883 kb on + strand at 197.883 kb on + strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.893 kb on + strand at 198.228 kb on - strand, within aroM at 198.278 kb on + strand, within aroM at 198.290 kb on + strand, within aroM at 198.294 kb on - strand, within aroM at 198.294 kb on - strand, within aroM at 198.296 kb on + strand, within aroM at 198.296 kb on + strand, within aroM at 198.308 kb on + strand, within aroM at 198.319 kb on - strand, within aroM at 198.384 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.421 kb on - strand, within aroM at 198.484 kb on - strand, within aroM at 198.484 kb on - strand, within aroM at 198.516 kb on - strand, within aroM at 198.516 kb on - strand, within aroM at 198.529 kb on + strand, within aroM at 198.530 kb on - strand, within aroM at 198.530 kb on - strand, within aroM at 198.560 kb on + strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.561 kb on - strand at 198.565 kb on - strand at 198.671 kb on + strand at 198.671 kb on + strand at 198.671 kb on + strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.680 kb on + strand at 198.725 kb on - strand at 198.773 kb on - strand at 198.776 kb on + strand at 198.822 kb on - strand at 198.822 kb on - strand at 199.013 kb on + strand, within yaiA at 199.013 kb on + strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.062 kb on + strand at 199.082 kb on - strand at 199.085 kb on + strand at 199.086 kb on - strand at 199.086 kb on - strand at 199.086 kb on - strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.096 kb on + strand at 199.179 kb on - strand, within aroL at 199.179 kb on - strand, within aroL at 199.182 kb on - strand, within aroL at 199.201 kb on - strand, within aroL at 199.270 kb on - strand, within aroL at 199.314 kb on + strand, within aroL at 199.397 kb on + strand, within aroL at 199.499 kb on + strand, within aroL at 199.500 kb on - strand, within aroL at 199.583 kb on + strand at 199.584 kb on - strand at 199.642 kb on + strand at 199.642 kb on + strand at 199.760 kb on - strand at 199.762 kb on + strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.763 kb on - strand at 199.764 kb on + strand at 199.765 kb on - strand at 199.774 kb on + strand at 199.775 kb on - strand at 199.888 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.922 kb on + strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.923 kb on - strand, within yaiI at 199.927 kb on + strand, within yaiI at 199.978 kb on - strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.039 kb on + strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.040 kb on - strand, within yaiI at 200.041 kb on + strand, within yaiI at 200.041 kb on + strand, within yaiI at 200.042 kb on - strand, within yaiI at 200.042 kb on - strand, within yaiI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 197,883 + +0.1 197,883 + +2.4 197,883 + -0.4 197,884 - +2.2 197,884 - +1.4 197,884 - -0.8 197,884 - +0.1 197,884 - -1.0 197,893 + +0.4 198,228 - aroM NOLOHH_01515 0.45 +0.4 198,278 + aroM NOLOHH_01515 0.52 -0.6 198,290 + aroM NOLOHH_01515 0.54 -0.2 198,294 - aroM NOLOHH_01515 0.54 -0.9 198,294 - aroM NOLOHH_01515 0.54 -1.6 198,296 + aroM NOLOHH_01515 0.55 +0.8 198,296 + aroM NOLOHH_01515 0.55 +0.4 198,308 + aroM NOLOHH_01515 0.56 -0.6 198,319 - aroM NOLOHH_01515 0.58 -2.9 198,384 - aroM NOLOHH_01515 0.68 +0.4 198,418 - aroM NOLOHH_01515 0.73 +0.4 198,418 - aroM NOLOHH_01515 0.73 -1.9 198,418 - aroM NOLOHH_01515 0.73 -1.7 198,421 - aroM NOLOHH_01515 0.73 +0.1 198,484 - aroM NOLOHH_01515 0.82 -0.1 198,484 - aroM NOLOHH_01515 0.82 -0.4 198,516 - aroM NOLOHH_01515 0.87 +0.3 198,516 - aroM NOLOHH_01515 0.87 -0.6 198,529 + aroM NOLOHH_01515 0.89 -0.6 198,530 - aroM NOLOHH_01515 0.89 +2.0 198,530 - aroM NOLOHH_01515 0.89 -1.1 198,560 + -1.2 198,560 + -0.6 198,560 + +1.4 198,560 + -0.4 198,561 - -0.2 198,565 - -0.5 198,671 + -0.2 198,671 + -0.2 198,671 + -0.6 198,672 - +0.6 198,672 - -0.6 198,672 - -1.2 198,672 - -0.6 198,680 + +0.1 198,725 - -0.5 198,773 - +1.6 198,776 + +0.1 198,822 - +0.6 198,822 - -0.8 199,013 + yaiA NOLOHH_01520 0.80 +0.6 199,013 + yaiA NOLOHH_01520 0.80 -0.6 199,014 - yaiA NOLOHH_01520 0.80 +0.1 199,014 - yaiA NOLOHH_01520 0.80 +0.2 199,014 - yaiA NOLOHH_01520 0.80 +0.8 199,015 + yaiA NOLOHH_01520 0.81 +0.2 199,015 + yaiA NOLOHH_01520 0.81 -0.8 199,015 + yaiA NOLOHH_01520 0.81 +1.0 199,015 + yaiA NOLOHH_01520 0.81 -1.2 199,016 - yaiA NOLOHH_01520 0.81 -0.9 199,016 - yaiA NOLOHH_01520 0.81 -0.8 199,016 - yaiA NOLOHH_01520 0.81 +0.6 199,016 - yaiA NOLOHH_01520 0.81 -0.5 199,016 - yaiA NOLOHH_01520 0.81 +0.6 199,016 - yaiA NOLOHH_01520 0.81 -0.6 199,016 - yaiA NOLOHH_01520 0.81 -1.4 199,017 + yaiA NOLOHH_01520 0.82 +0.4 199,017 + yaiA NOLOHH_01520 0.82 -1.2 199,017 + yaiA NOLOHH_01520 0.82 +2.0 199,017 + yaiA NOLOHH_01520 0.82 +0.4 199,017 + yaiA NOLOHH_01520 0.82 +2.2 199,017 + yaiA NOLOHH_01520 0.82 +1.4 199,017 + yaiA NOLOHH_01520 0.82 +1.4 199,017 + yaiA NOLOHH_01520 0.82 -0.2 199,017 + yaiA NOLOHH_01520 0.82 -1.2 199,017 + yaiA NOLOHH_01520 0.82 +0.7 199,017 + yaiA NOLOHH_01520 0.82 -0.6 199,018 - yaiA NOLOHH_01520 0.82 -1.9 199,018 - yaiA NOLOHH_01520 0.82 -0.4 199,018 - yaiA NOLOHH_01520 0.82 -0.3 199,018 - yaiA NOLOHH_01520 0.82 -0.0 199,018 - yaiA NOLOHH_01520 0.82 -0.0 199,018 - yaiA NOLOHH_01520 0.82 -1.9 199,018 - yaiA NOLOHH_01520 0.82 -0.1 199,018 - yaiA NOLOHH_01520 0.82 +0.7 199,018 - yaiA NOLOHH_01520 0.82 +0.8 199,018 - yaiA NOLOHH_01520 0.82 +0.7 199,018 - yaiA NOLOHH_01520 0.82 +0.1 199,018 - yaiA NOLOHH_01520 0.82 +1.2 199,018 - yaiA NOLOHH_01520 0.82 +0.0 199,018 - yaiA NOLOHH_01520 0.82 +0.9 199,062 + -0.9 199,082 - +0.1 199,085 + -0.2 199,086 - -0.3 199,086 - -0.6 199,086 - +0.4 199,087 + -0.6 199,088 - +0.9 199,096 + +0.4 199,179 - aroL NOLOHH_01525 0.15 +0.2 199,179 - aroL NOLOHH_01525 0.15 -1.2 199,182 - aroL NOLOHH_01525 0.15 -0.6 199,201 - aroL NOLOHH_01525 0.19 +1.1 199,270 - aroL NOLOHH_01525 0.32 +0.6 199,314 + aroL NOLOHH_01525 0.41 +1.0 199,397 + aroL NOLOHH_01525 0.56 +1.4 199,499 + aroL NOLOHH_01525 0.76 +1.4 199,500 - aroL NOLOHH_01525 0.76 +1.1 199,583 + -0.2 199,584 - +1.8 199,642 + -0.4 199,642 + -0.0 199,760 - -0.5 199,762 + +1.5 199,763 - +0.2 199,763 - -1.1 199,763 - -0.4 199,763 - -0.2 199,764 + -0.9 199,765 - +0.0 199,774 + +0.4 199,775 - -0.6 199,888 + yaiI NOLOHH_01530 0.17 +0.3 199,922 + yaiI NOLOHH_01530 0.25 +0.2 199,922 + yaiI NOLOHH_01530 0.25 -1.6 199,922 + yaiI NOLOHH_01530 0.25 +1.2 199,922 + yaiI NOLOHH_01530 0.25 +0.4 199,922 + yaiI NOLOHH_01530 0.25 -0.4 199,922 + yaiI NOLOHH_01530 0.25 +1.4 199,923 - yaiI NOLOHH_01530 0.25 -0.0 199,923 - yaiI NOLOHH_01530 0.25 -0.0 199,923 - yaiI NOLOHH_01530 0.25 -0.8 199,927 + yaiI NOLOHH_01530 0.26 -1.9 199,978 - yaiI NOLOHH_01530 0.37 +0.8 200,039 + yaiI NOLOHH_01530 0.50 +1.4 200,039 + yaiI NOLOHH_01530 0.50 -1.2 200,039 + yaiI NOLOHH_01530 0.50 +0.7 200,039 + yaiI NOLOHH_01530 0.50 -1.2 200,040 - yaiI NOLOHH_01530 0.51 -1.0 200,040 - yaiI NOLOHH_01530 0.51 -0.0 200,040 - yaiI NOLOHH_01530 0.51 +0.4 200,040 - yaiI NOLOHH_01530 0.51 -1.6 200,040 - yaiI NOLOHH_01530 0.51 -0.8 200,040 - yaiI NOLOHH_01530 0.51 +1.3 200,041 + yaiI NOLOHH_01530 0.51 -0.0 200,041 + yaiI NOLOHH_01530 0.51 -0.9 200,042 - yaiI NOLOHH_01530 0.51 -0.5 200,042 - yaiI NOLOHH_01530 0.51 -0.5
Or see this region's nucleotide sequence