Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_01505 and ppnP are separated by 260 nucleotides ppnP and aroM are separated by 71 nucleotides aroM and yaiA are separated by 257 nucleotides yaiA and aroL are separated by 49 nucleotides
NOLOHH_01505: NOLOHH_01505 - hypothetical protein, at 196,946 to 197,308
_01505
NOLOHH_01510: ppnP - pyrimidine/purine nucleoside phosphorylase, at 197,569 to 197,853
ppnP
NOLOHH_01515: aroM - Protein AroM, at 197,925 to 198,602
aroM
NOLOHH_01520: yaiA - Uncharacterized protein YaiA, at 198,860 to 199,051
yaiA
NOLOHH_01525: aroL - shikimate kinase AroL, at 199,101 to 199,625
aroL
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.941 kb on + strand at 196.944 kb on - strand at 196.944 kb on - strand at 196.944 kb on - strand at 196.944 kb on - strand at 196.944 kb on - strand at 196.948 kb on - strand at 196.985 kb on - strand, within NOLOHH_01505 at 196.997 kb on - strand, within NOLOHH_01505 at 196.997 kb on - strand, within NOLOHH_01505 at 197.004 kb on - strand, within NOLOHH_01505 at 197.013 kb on - strand, within NOLOHH_01505 at 197.121 kb on + strand, within NOLOHH_01505 at 197.354 kb on + strand at 197.355 kb on - strand at 197.361 kb on + strand at 197.361 kb on + strand at 197.361 kb on + strand at 197.362 kb on - strand at 197.438 kb on + strand at 197.442 kb on + strand at 197.443 kb on - strand at 197.444 kb on + strand at 197.468 kb on - strand at 197.640 kb on + strand, within ppnP at 197.660 kb on + strand, within ppnP at 197.660 kb on + strand, within ppnP at 197.660 kb on + strand, within ppnP at 197.660 kb on + strand, within ppnP at 197.661 kb on - strand, within ppnP at 197.661 kb on - strand, within ppnP at 197.661 kb on - strand, within ppnP at 197.690 kb on - strand, within ppnP at 197.835 kb on - strand at 197.835 kb on - strand at 197.841 kb on + strand at 197.883 kb on + strand at 197.883 kb on + strand at 197.883 kb on + strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.884 kb on - strand at 197.893 kb on + strand at 198.228 kb on - strand, within aroM at 198.278 kb on + strand, within aroM at 198.290 kb on + strand, within aroM at 198.294 kb on - strand, within aroM at 198.294 kb on - strand, within aroM at 198.296 kb on + strand, within aroM at 198.296 kb on + strand, within aroM at 198.308 kb on + strand, within aroM at 198.319 kb on - strand, within aroM at 198.384 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.418 kb on - strand, within aroM at 198.421 kb on - strand, within aroM at 198.484 kb on - strand, within aroM at 198.484 kb on - strand, within aroM at 198.516 kb on - strand, within aroM at 198.516 kb on - strand, within aroM at 198.529 kb on + strand, within aroM at 198.530 kb on - strand, within aroM at 198.530 kb on - strand, within aroM at 198.560 kb on + strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.560 kb on + strand at 198.561 kb on - strand at 198.565 kb on - strand at 198.671 kb on + strand at 198.671 kb on + strand at 198.671 kb on + strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.672 kb on - strand at 198.680 kb on + strand at 198.725 kb on - strand at 198.773 kb on - strand at 198.776 kb on + strand at 198.822 kb on - strand at 198.822 kb on - strand at 199.013 kb on + strand, within yaiA at 199.013 kb on + strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.014 kb on - strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.015 kb on + strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.016 kb on - strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.017 kb on + strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.018 kb on - strand, within yaiA at 199.062 kb on + strand at 199.082 kb on - strand at 199.085 kb on + strand at 199.086 kb on - strand at 199.086 kb on - strand at 199.086 kb on - strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.096 kb on + strand at 199.179 kb on - strand, within aroL at 199.179 kb on - strand, within aroL at 199.182 kb on - strand, within aroL at 199.201 kb on - strand, within aroL at 199.270 kb on - strand, within aroL at 199.314 kb on + strand, within aroL at 199.397 kb on + strand, within aroL at 199.499 kb on + strand, within aroL at 199.500 kb on - strand, within aroL at 199.583 kb on + strand at 199.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 196,941 + -0.9 196,944 - -0.6 196,944 - +1.1 196,944 - -0.5 196,944 - +0.4 196,944 - -0.1 196,948 - +0.7 196,985 - NOLOHH_01505 0.11 +1.6 196,997 - NOLOHH_01505 0.14 -0.1 196,997 - NOLOHH_01505 0.14 -0.2 197,004 - NOLOHH_01505 0.16 +0.4 197,013 - NOLOHH_01505 0.18 +1.4 197,121 + NOLOHH_01505 0.48 +2.4 197,354 + -0.4 197,355 - -0.1 197,361 + -0.1 197,361 + -0.0 197,361 + -0.7 197,362 - -1.4 197,438 + -0.2 197,442 + +0.1 197,443 - +0.1 197,444 + +0.4 197,468 - +0.4 197,640 + ppnP NOLOHH_01510 0.25 -1.0 197,660 + ppnP NOLOHH_01510 0.32 -1.1 197,660 + ppnP NOLOHH_01510 0.32 -0.1 197,660 + ppnP NOLOHH_01510 0.32 -1.9 197,660 + ppnP NOLOHH_01510 0.32 -0.9 197,661 - ppnP NOLOHH_01510 0.32 -1.0 197,661 - ppnP NOLOHH_01510 0.32 -0.6 197,661 - ppnP NOLOHH_01510 0.32 +0.2 197,690 - ppnP NOLOHH_01510 0.42 +0.4 197,835 - +0.4 197,835 - -1.9 197,841 + +0.4 197,883 + +0.1 197,883 + +2.4 197,883 + -0.4 197,884 - +2.2 197,884 - +1.4 197,884 - -0.8 197,884 - +0.1 197,884 - -1.0 197,893 + +0.4 198,228 - aroM NOLOHH_01515 0.45 +0.4 198,278 + aroM NOLOHH_01515 0.52 -0.6 198,290 + aroM NOLOHH_01515 0.54 -0.2 198,294 - aroM NOLOHH_01515 0.54 -0.9 198,294 - aroM NOLOHH_01515 0.54 -1.6 198,296 + aroM NOLOHH_01515 0.55 +0.8 198,296 + aroM NOLOHH_01515 0.55 +0.4 198,308 + aroM NOLOHH_01515 0.56 -0.6 198,319 - aroM NOLOHH_01515 0.58 -2.9 198,384 - aroM NOLOHH_01515 0.68 +0.4 198,418 - aroM NOLOHH_01515 0.73 +0.4 198,418 - aroM NOLOHH_01515 0.73 -1.9 198,418 - aroM NOLOHH_01515 0.73 -1.7 198,421 - aroM NOLOHH_01515 0.73 +0.1 198,484 - aroM NOLOHH_01515 0.82 -0.1 198,484 - aroM NOLOHH_01515 0.82 -0.4 198,516 - aroM NOLOHH_01515 0.87 +0.3 198,516 - aroM NOLOHH_01515 0.87 -0.6 198,529 + aroM NOLOHH_01515 0.89 -0.6 198,530 - aroM NOLOHH_01515 0.89 +2.0 198,530 - aroM NOLOHH_01515 0.89 -1.1 198,560 + -1.2 198,560 + -0.6 198,560 + +1.4 198,560 + -0.4 198,561 - -0.2 198,565 - -0.5 198,671 + -0.2 198,671 + -0.2 198,671 + -0.6 198,672 - +0.6 198,672 - -0.6 198,672 - -1.2 198,672 - -0.6 198,680 + +0.1 198,725 - -0.5 198,773 - +1.6 198,776 + +0.1 198,822 - +0.6 198,822 - -0.8 199,013 + yaiA NOLOHH_01520 0.80 +0.6 199,013 + yaiA NOLOHH_01520 0.80 -0.6 199,014 - yaiA NOLOHH_01520 0.80 +0.1 199,014 - yaiA NOLOHH_01520 0.80 +0.2 199,014 - yaiA NOLOHH_01520 0.80 +0.8 199,015 + yaiA NOLOHH_01520 0.81 +0.2 199,015 + yaiA NOLOHH_01520 0.81 -0.8 199,015 + yaiA NOLOHH_01520 0.81 +1.0 199,015 + yaiA NOLOHH_01520 0.81 -1.2 199,016 - yaiA NOLOHH_01520 0.81 -0.9 199,016 - yaiA NOLOHH_01520 0.81 -0.8 199,016 - yaiA NOLOHH_01520 0.81 +0.6 199,016 - yaiA NOLOHH_01520 0.81 -0.5 199,016 - yaiA NOLOHH_01520 0.81 +0.6 199,016 - yaiA NOLOHH_01520 0.81 -0.6 199,016 - yaiA NOLOHH_01520 0.81 -1.4 199,017 + yaiA NOLOHH_01520 0.82 +0.4 199,017 + yaiA NOLOHH_01520 0.82 -1.2 199,017 + yaiA NOLOHH_01520 0.82 +2.0 199,017 + yaiA NOLOHH_01520 0.82 +0.4 199,017 + yaiA NOLOHH_01520 0.82 +2.2 199,017 + yaiA NOLOHH_01520 0.82 +1.4 199,017 + yaiA NOLOHH_01520 0.82 +1.4 199,017 + yaiA NOLOHH_01520 0.82 -0.2 199,017 + yaiA NOLOHH_01520 0.82 -1.2 199,017 + yaiA NOLOHH_01520 0.82 +0.7 199,017 + yaiA NOLOHH_01520 0.82 -0.6 199,018 - yaiA NOLOHH_01520 0.82 -1.9 199,018 - yaiA NOLOHH_01520 0.82 -0.4 199,018 - yaiA NOLOHH_01520 0.82 -0.3 199,018 - yaiA NOLOHH_01520 0.82 -0.0 199,018 - yaiA NOLOHH_01520 0.82 -0.0 199,018 - yaiA NOLOHH_01520 0.82 -1.9 199,018 - yaiA NOLOHH_01520 0.82 -0.1 199,018 - yaiA NOLOHH_01520 0.82 +0.7 199,018 - yaiA NOLOHH_01520 0.82 +0.8 199,018 - yaiA NOLOHH_01520 0.82 +0.7 199,018 - yaiA NOLOHH_01520 0.82 +0.1 199,018 - yaiA NOLOHH_01520 0.82 +1.2 199,018 - yaiA NOLOHH_01520 0.82 +0.0 199,018 - yaiA NOLOHH_01520 0.82 +0.9 199,062 + -0.9 199,082 - +0.1 199,085 + -0.2 199,086 - -0.3 199,086 - -0.6 199,086 - +0.4 199,087 + -0.6 199,088 - +0.9 199,096 + +0.4 199,179 - aroL NOLOHH_01525 0.15 +0.2 199,179 - aroL NOLOHH_01525 0.15 -1.2 199,182 - aroL NOLOHH_01525 0.15 -0.6 199,201 - aroL NOLOHH_01525 0.19 +1.1 199,270 - aroL NOLOHH_01525 0.32 +0.6 199,314 + aroL NOLOHH_01525 0.41 +1.0 199,397 + aroL NOLOHH_01525 0.56 +1.4 199,499 + aroL NOLOHH_01525 0.76 +1.4 199,500 - aroL NOLOHH_01525 0.76 +1.1 199,583 + -0.2 199,584 - +1.8
Or see this region's nucleotide sequence