Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00725

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbet and exoD overlap by 4 nucleotidesexoD and NOLOHH_00720 overlap by 4 nucleotidesNOLOHH_00720 and NOLOHH_00725 overlap by 8 nucleotidesNOLOHH_00725 and NOLOHH_00730 overlap by 4 nucleotidesNOLOHH_00730 and NOLOHH_00735 overlap by 4 nucleotidesNOLOHH_00735 and dksA are separated by 98 nucleotidesdksA and NOLOHH_00745 are separated by 47 nucleotides NOLOHH_00710: bet - phage recombination protein Bet, at 33,813 to 34,598 bet NOLOHH_00715: exoD - Putative uncharacterized protein ExoD, at 34,595 to 35,275 exoD NOLOHH_00720: NOLOHH_00720 - cruciferin, at 35,272 to 35,433 _00720 NOLOHH_00725: NOLOHH_00725 - phage N-6-adenine-methyltransferase, at 35,426 to 35,983 _00725 NOLOHH_00730: NOLOHH_00730 - DUF1382 domain-containing protein, at 35,980 to 36,063 _00730 NOLOHH_00735: NOLOHH_00735 - Cell division protein ZapA, at 36,060 to 36,275 _00735 NOLOHH_00740: dksA - conjugal transfer protein TraR, at 36,374 to 36,592 dksA NOLOHH_00745: NOLOHH_00745 - hypothetical protein, at 36,640 to 36,918 _00745 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.452 kb on - strand, within betat 34.472 kb on - strand, within betat 34.472 kb on - strand, within betat 34.472 kb on - strand, within betat 34.472 kb on - strand, within betat 34.472 kb on - strand, within betat 34.472 kb on - strand, within betat 34.492 kb on + strand, within betat 34.543 kb on + strandat 34.544 kb on - strandat 34.763 kb on + strand, within exoDat 34.764 kb on - strand, within exoDat 34.844 kb on + strand, within exoDat 34.887 kb on + strand, within exoDat 34.887 kb on + strand, within exoDat 34.914 kb on - strand, within exoDat 34.957 kb on - strand, within exoDat 34.996 kb on + strand, within exoDat 35.054 kb on + strand, within exoDat 35.054 kb on + strand, within exoDat 35.105 kb on + strand, within exoDat 35.105 kb on + strand, within exoDat 35.106 kb on - strand, within exoDat 35.106 kb on - strand, within exoDat 35.117 kb on + strand, within exoDat 35.117 kb on + strand, within exoDat 35.117 kb on + strand, within exoDat 35.118 kb on - strand, within exoDat 35.118 kb on - strand, within exoDat 35.150 kb on + strand, within exoDat 35.150 kb on + strand, within exoDat 35.150 kb on + strand, within exoDat 35.150 kb on + strand, within exoDat 35.151 kb on - strand, within exoDat 35.151 kb on - strand, within exoDat 35.151 kb on - strand, within exoDat 35.177 kb on + strand, within exoDat 35.177 kb on + strand, within exoDat 35.253 kb on + strandat 35.253 kb on + strandat 35.253 kb on + strandat 35.289 kb on + strand, within NOLOHH_00720at 35.328 kb on + strand, within NOLOHH_00720at 35.345 kb on + strand, within NOLOHH_00720at 35.345 kb on + strand, within NOLOHH_00720at 35.449 kb on + strandat 35.506 kb on + strand, within NOLOHH_00725at 35.559 kb on + strand, within NOLOHH_00725at 35.559 kb on + strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.572 kb on + strand, within NOLOHH_00725at 35.625 kb on - strand, within NOLOHH_00725at 35.636 kb on + strand, within NOLOHH_00725at 35.637 kb on - strand, within NOLOHH_00725at 35.637 kb on - strand, within NOLOHH_00725at 35.657 kb on + strand, within NOLOHH_00725at 35.657 kb on + strand, within NOLOHH_00725at 35.658 kb on - strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.666 kb on - strand, within NOLOHH_00725at 35.666 kb on - strand, within NOLOHH_00725at 35.724 kb on + strand, within NOLOHH_00725at 35.724 kb on + strand, within NOLOHH_00725at 35.725 kb on - strand, within NOLOHH_00725at 35.725 kb on - strand, within NOLOHH_00725at 35.730 kb on + strand, within NOLOHH_00725at 35.821 kb on + strand, within NOLOHH_00725at 35.822 kb on - strand, within NOLOHH_00725at 35.858 kb on - strand, within NOLOHH_00725at 35.858 kb on - strand, within NOLOHH_00725at 35.861 kb on - strand, within NOLOHH_00725at 35.879 kb on - strand, within NOLOHH_00725at 35.879 kb on - strand, within NOLOHH_00725at 35.914 kb on + strand, within NOLOHH_00725at 35.914 kb on + strand, within NOLOHH_00725at 35.915 kb on - strand, within NOLOHH_00725at 36.020 kb on + strand, within NOLOHH_00730at 36.034 kb on - strand, within NOLOHH_00730at 36.034 kb on - strand, within NOLOHH_00730at 36.176 kb on - strand, within NOLOHH_00735at 36.176 kb on - strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.229 kb on + strand, within NOLOHH_00735at 36.229 kb on + strand, within NOLOHH_00735at 36.230 kb on - strand, within NOLOHH_00735at 36.250 kb on + strand, within NOLOHH_00735at 36.304 kb on - strandat 36.344 kb on - strandat 36.452 kb on + strand, within dksAat 36.568 kb on + strand, within dksAat 36.569 kb on - strand, within dksAat 36.670 kb on + strand, within NOLOHH_00745at 36.670 kb on + strand, within NOLOHH_00745at 36.671 kb on - strand, within NOLOHH_00745at 36.730 kb on + strand, within NOLOHH_00745at 36.730 kb on + strand, within NOLOHH_00745at 36.753 kb on + strand, within NOLOHH_00745at 36.754 kb on - strand, within NOLOHH_00745at 36.775 kb on - strand, within NOLOHH_00745at 36.775 kb on - strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.885 kb on + strand, within NOLOHH_00745at 36.886 kb on - strand, within NOLOHH_00745at 36.886 kb on - strand, within NOLOHH_00745at 36.900 kb on - strandat 36.934 kb on + strandat 36.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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34,452 - bet NOLOHH_00710 0.81 -1.2
34,472 - bet NOLOHH_00710 0.84 +0.3
34,472 - bet NOLOHH_00710 0.84 +0.0
34,472 - bet NOLOHH_00710 0.84 +1.0
34,472 - bet NOLOHH_00710 0.84 +0.4
34,472 - bet NOLOHH_00710 0.84 -0.7
34,472 - bet NOLOHH_00710 0.84 +1.7
34,492 + bet NOLOHH_00710 0.86 +0.3
34,543 + +0.4
34,544 - +0.6
34,763 + exoD NOLOHH_00715 0.25 -0.6
34,764 - exoD NOLOHH_00715 0.25 -1.3
34,844 + exoD NOLOHH_00715 0.37 +0.0
34,887 + exoD NOLOHH_00715 0.43 -0.6
34,887 + exoD NOLOHH_00715 0.43 +2.0
34,914 - exoD NOLOHH_00715 0.47 -0.7
34,957 - exoD NOLOHH_00715 0.53 -0.5
34,996 + exoD NOLOHH_00715 0.59 +0.2
35,054 + exoD NOLOHH_00715 0.67 +1.2
35,054 + exoD NOLOHH_00715 0.67 -0.3
35,105 + exoD NOLOHH_00715 0.75 +0.0
35,105 + exoD NOLOHH_00715 0.75 +0.1
35,106 - exoD NOLOHH_00715 0.75 +1.4
35,106 - exoD NOLOHH_00715 0.75 +2.0
35,117 + exoD NOLOHH_00715 0.77 +0.4
35,117 + exoD NOLOHH_00715 0.77 +0.1
35,117 + exoD NOLOHH_00715 0.77 -0.9
35,118 - exoD NOLOHH_00715 0.77 -1.2
35,118 - exoD NOLOHH_00715 0.77 -1.3
35,150 + exoD NOLOHH_00715 0.81 +0.2
35,150 + exoD NOLOHH_00715 0.81 +0.4
35,150 + exoD NOLOHH_00715 0.81 +0.8
35,150 + exoD NOLOHH_00715 0.81 -0.3
35,151 - exoD NOLOHH_00715 0.82 -0.7
35,151 - exoD NOLOHH_00715 0.82 +1.0
35,151 - exoD NOLOHH_00715 0.82 -1.6
35,177 + exoD NOLOHH_00715 0.85 +0.7
35,177 + exoD NOLOHH_00715 0.85 -0.4
35,253 + -0.2
35,253 + +0.3
35,253 + -0.5
35,289 + NOLOHH_00720 0.10 -0.2
35,328 + NOLOHH_00720 0.35 +1.1
35,345 + NOLOHH_00720 0.45 +0.4
35,345 + NOLOHH_00720 0.45 +0.7
35,449 + +0.4
35,506 + NOLOHH_00725 0.14 -1.2
35,559 + NOLOHH_00725 0.24 -0.6
35,559 + NOLOHH_00725 0.24 +0.1
35,560 - NOLOHH_00725 0.24 +0.4
35,560 - NOLOHH_00725 0.24 -0.9
35,560 - NOLOHH_00725 0.24 +1.0
35,572 + NOLOHH_00725 0.26 +0.1
35,625 - NOLOHH_00725 0.36 -0.1
35,636 + NOLOHH_00725 0.38 -2.2
35,637 - NOLOHH_00725 0.38 -1.9
35,637 - NOLOHH_00725 0.38 +0.0
35,657 + NOLOHH_00725 0.41 -0.2
35,657 + NOLOHH_00725 0.41 -0.3
35,658 - NOLOHH_00725 0.42 +0.8
35,665 + NOLOHH_00725 0.43 -0.6
35,665 + NOLOHH_00725 0.43 -0.8
35,665 + NOLOHH_00725 0.43 +1.0
35,666 - NOLOHH_00725 0.43 -0.2
35,666 - NOLOHH_00725 0.43 -0.7
35,724 + NOLOHH_00725 0.53 -1.0
35,724 + NOLOHH_00725 0.53 +1.5
35,725 - NOLOHH_00725 0.54 -0.6
35,725 - NOLOHH_00725 0.54 +0.4
35,730 + NOLOHH_00725 0.54 -2.4
35,821 + NOLOHH_00725 0.71 -0.6
35,822 - NOLOHH_00725 0.71 +0.4
35,858 - NOLOHH_00725 0.77 +0.6
35,858 - NOLOHH_00725 0.77 -1.6
35,861 - NOLOHH_00725 0.78 +1.4
35,879 - NOLOHH_00725 0.81 -0.6
35,879 - NOLOHH_00725 0.81 -0.2
35,914 + NOLOHH_00725 0.87 -2.4
35,914 + NOLOHH_00725 0.87 +0.4
35,915 - NOLOHH_00725 0.88 -0.6
36,020 + NOLOHH_00730 0.48 +0.0
36,034 - NOLOHH_00730 0.64 +0.4
36,034 - NOLOHH_00730 0.64 +0.1
36,176 - NOLOHH_00735 0.54 -0.6
36,176 - NOLOHH_00735 0.54 -0.2
36,179 + NOLOHH_00735 0.55 +2.0
36,179 + NOLOHH_00735 0.55 -0.1
36,179 + NOLOHH_00735 0.55 -2.0
36,179 + NOLOHH_00735 0.55 -0.2
36,180 - NOLOHH_00735 0.56 -0.4
36,180 - NOLOHH_00735 0.56 +0.2
36,180 - NOLOHH_00735 0.56 +0.8
36,229 + NOLOHH_00735 0.78 +0.4
36,229 + NOLOHH_00735 0.78 -0.9
36,230 - NOLOHH_00735 0.79 +0.4
36,250 + NOLOHH_00735 0.88 -1.4
36,304 - -1.4
36,344 - +0.2
36,452 + dksA NOLOHH_00740 0.36 -1.6
36,568 + dksA NOLOHH_00740 0.89 -0.2
36,569 - dksA NOLOHH_00740 0.89 +0.4
36,670 + NOLOHH_00745 0.11 -0.9
36,670 + NOLOHH_00745 0.11 +0.0
36,671 - NOLOHH_00745 0.11 +0.8
36,730 + NOLOHH_00745 0.32 +0.2
36,730 + NOLOHH_00745 0.32 -0.8
36,753 + NOLOHH_00745 0.41 -0.7
36,754 - NOLOHH_00745 0.41 -0.2
36,775 - NOLOHH_00745 0.48 -1.2
36,775 - NOLOHH_00745 0.48 -1.3
36,849 + NOLOHH_00745 0.75 +0.4
36,849 + NOLOHH_00745 0.75 +1.2
36,849 + NOLOHH_00745 0.75 +0.4
36,885 + NOLOHH_00745 0.88 -1.6
36,886 - NOLOHH_00745 0.88 +0.4
36,886 - NOLOHH_00745 0.88 -0.3
36,900 - +0.4
36,934 + +0.0
36,935 - -0.6

Or see this region's nucleotide sequence