Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00685

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00675 and NOLOHH_00680 are separated by 30 nucleotidesNOLOHH_00680 and NOLOHH_00685 are separated by 317 nucleotidesNOLOHH_00685 and NOLOHH_00690 are separated by 46 nucleotidesNOLOHH_00690 and NOLOHH_00695 overlap by 4 nucleotides NOLOHH_00675: NOLOHH_00675 - regulator, at 29,429 to 29,968 _00675 NOLOHH_00680: NOLOHH_00680 - transcriptional regulator, at 29,999 to 30,226 _00680 NOLOHH_00685: NOLOHH_00685 - HTH cro/C1-type domain-containing protein, at 30,544 to 31,029 _00685 NOLOHH_00690: NOLOHH_00690 - Phage-like protein, at 31,076 to 31,924 _00690 NOLOHH_00695: NOLOHH_00695 - DUF3037 domain-containing protein, at 31,921 to 32,727 _00695 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.613 kb on + strand, within NOLOHH_00675at 29.613 kb on + strand, within NOLOHH_00675at 29.613 kb on + strand, within NOLOHH_00675at 29.613 kb on + strand, within NOLOHH_00675at 29.952 kb on + strandat 29.952 kb on + strandat 29.956 kb on + strandat 29.956 kb on + strandat 29.956 kb on + strandat 29.957 kb on - strandat 29.957 kb on - strandat 29.968 kb on + strandat 29.968 kb on + strandat 29.968 kb on + strandat 29.968 kb on + strandat 30.013 kb on + strandat 30.061 kb on + strand, within NOLOHH_00680at 30.095 kb on + strand, within NOLOHH_00680at 30.161 kb on + strand, within NOLOHH_00680at 30.161 kb on + strand, within NOLOHH_00680at 30.190 kb on + strand, within NOLOHH_00680at 30.193 kb on + strand, within NOLOHH_00680at 30.322 kb on + strandat 31.014 kb on + strandat 31.047 kb on - strandat 31.225 kb on + strand, within NOLOHH_00690at 31.247 kb on + strand, within NOLOHH_00690at 31.248 kb on - strand, within NOLOHH_00690at 31.256 kb on - strand, within NOLOHH_00690at 31.335 kb on + strand, within NOLOHH_00690at 31.336 kb on - strand, within NOLOHH_00690at 31.384 kb on + strand, within NOLOHH_00690at 31.384 kb on + strand, within NOLOHH_00690at 31.385 kb on - strand, within NOLOHH_00690at 31.385 kb on - strand, within NOLOHH_00690at 31.517 kb on + strand, within NOLOHH_00690at 31.517 kb on + strand, within NOLOHH_00690at 31.518 kb on - strand, within NOLOHH_00690at 31.537 kb on - strand, within NOLOHH_00690at 31.537 kb on - strand, within NOLOHH_00690at 31.540 kb on + strand, within NOLOHH_00690at 31.541 kb on - strand, within NOLOHH_00690at 31.565 kb on + strand, within NOLOHH_00690at 31.565 kb on + strand, within NOLOHH_00690at 31.565 kb on + strand, within NOLOHH_00690at 31.565 kb on + strand, within NOLOHH_00690at 31.569 kb on + strand, within NOLOHH_00690at 31.569 kb on + strand, within NOLOHH_00690at 31.569 kb on + strand, within NOLOHH_00690at 31.569 kb on + strand, within NOLOHH_00690at 31.569 kb on + strand, within NOLOHH_00690at 31.570 kb on - strand, within NOLOHH_00690at 31.570 kb on - strand, within NOLOHH_00690at 31.571 kb on + strand, within NOLOHH_00690at 31.571 kb on + strand, within NOLOHH_00690at 31.571 kb on + strand, within NOLOHH_00690at 31.571 kb on + strand, within NOLOHH_00690at 31.572 kb on - strand, within NOLOHH_00690at 31.597 kb on + strand, within NOLOHH_00690at 31.597 kb on + strand, within NOLOHH_00690at 31.604 kb on - strand, within NOLOHH_00690at 31.623 kb on + strand, within NOLOHH_00690at 31.623 kb on + strand, within NOLOHH_00690at 31.637 kb on - strand, within NOLOHH_00690at 31.654 kb on + strand, within NOLOHH_00690at 31.663 kb on + strand, within NOLOHH_00690at 31.663 kb on + strand, within NOLOHH_00690at 31.663 kb on + strand, within NOLOHH_00690at 31.663 kb on + strand, within NOLOHH_00690at 31.663 kb on + strand, within NOLOHH_00690at 31.664 kb on - strand, within NOLOHH_00690at 31.664 kb on - strand, within NOLOHH_00690at 31.664 kb on - strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.665 kb on + strand, within NOLOHH_00690at 31.666 kb on - strand, within NOLOHH_00690at 31.668 kb on + strand, within NOLOHH_00690at 31.669 kb on - strand, within NOLOHH_00690at 31.752 kb on + strand, within NOLOHH_00690at 31.752 kb on + strand, within NOLOHH_00690at 31.753 kb on - strand, within NOLOHH_00690at 31.792 kb on + strand, within NOLOHH_00690at 31.794 kb on + strand, within NOLOHH_00690at 31.803 kb on + strand, within NOLOHH_00690at 31.807 kb on + strand, within NOLOHH_00690at 31.807 kb on + strand, within NOLOHH_00690at 31.807 kb on + strand, within NOLOHH_00690at 31.807 kb on + strand, within NOLOHH_00690at 31.807 kb on + strand, within NOLOHH_00690at 31.844 kb on - strandat 31.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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29,613 + NOLOHH_00675 0.34 +1.1
29,613 + NOLOHH_00675 0.34 +0.0
29,613 + NOLOHH_00675 0.34 +0.4
29,613 + NOLOHH_00675 0.34 +0.4
29,952 + +0.2
29,952 + +0.0
29,956 + -0.8
29,956 + -1.2
29,956 + +1.4
29,957 - +0.4
29,957 - -0.3
29,968 + -1.2
29,968 + -1.6
29,968 + +1.2
29,968 + +1.2
30,013 + +0.4
30,061 + NOLOHH_00680 0.27 -1.4
30,095 + NOLOHH_00680 0.42 +1.7
30,161 + NOLOHH_00680 0.71 +0.0
30,161 + NOLOHH_00680 0.71 -1.7
30,190 + NOLOHH_00680 0.84 +0.1
30,193 + NOLOHH_00680 0.85 +0.1
30,322 + -0.4
31,014 + +0.3
31,047 - -0.6
31,225 + NOLOHH_00690 0.18 -0.4
31,247 + NOLOHH_00690 0.20 +0.4
31,248 - NOLOHH_00690 0.20 +1.4
31,256 - NOLOHH_00690 0.21 -0.6
31,335 + NOLOHH_00690 0.31 +1.0
31,336 - NOLOHH_00690 0.31 +0.0
31,384 + NOLOHH_00690 0.36 +1.4
31,384 + NOLOHH_00690 0.36 +1.4
31,385 - NOLOHH_00690 0.36 +0.7
31,385 - NOLOHH_00690 0.36 -1.1
31,517 + NOLOHH_00690 0.52 -1.9
31,517 + NOLOHH_00690 0.52 +0.2
31,518 - NOLOHH_00690 0.52 +1.2
31,537 - NOLOHH_00690 0.54 -0.4
31,537 - NOLOHH_00690 0.54 -0.4
31,540 + NOLOHH_00690 0.55 +0.8
31,541 - NOLOHH_00690 0.55 -1.8
31,565 + NOLOHH_00690 0.58 -0.6
31,565 + NOLOHH_00690 0.58 +0.4
31,565 + NOLOHH_00690 0.58 -0.0
31,565 + NOLOHH_00690 0.58 +1.2
31,569 + NOLOHH_00690 0.58 -0.3
31,569 + NOLOHH_00690 0.58 -0.1
31,569 + NOLOHH_00690 0.58 -0.5
31,569 + NOLOHH_00690 0.58 -0.6
31,569 + NOLOHH_00690 0.58 -0.6
31,570 - NOLOHH_00690 0.58 +2.4
31,570 - NOLOHH_00690 0.58 +0.2
31,571 + NOLOHH_00690 0.58 +0.4
31,571 + NOLOHH_00690 0.58 +0.0
31,571 + NOLOHH_00690 0.58 -0.1
31,571 + NOLOHH_00690 0.58 -0.6
31,572 - NOLOHH_00690 0.58 +1.4
31,597 + NOLOHH_00690 0.61 +1.0
31,597 + NOLOHH_00690 0.61 -1.6
31,604 - NOLOHH_00690 0.62 -0.4
31,623 + NOLOHH_00690 0.64 -0.4
31,623 + NOLOHH_00690 0.64 -1.2
31,637 - NOLOHH_00690 0.66 +0.7
31,654 + NOLOHH_00690 0.68 -1.2
31,663 + NOLOHH_00690 0.69 -0.2
31,663 + NOLOHH_00690 0.69 -0.6
31,663 + NOLOHH_00690 0.69 -0.3
31,663 + NOLOHH_00690 0.69 -0.7
31,663 + NOLOHH_00690 0.69 +0.1
31,664 - NOLOHH_00690 0.69 -0.9
31,664 - NOLOHH_00690 0.69 +0.6
31,664 - NOLOHH_00690 0.69 -1.8
31,665 + NOLOHH_00690 0.69 -1.2
31,665 + NOLOHH_00690 0.69 +2.2
31,665 + NOLOHH_00690 0.69 -1.6
31,665 + NOLOHH_00690 0.69 +0.0
31,665 + NOLOHH_00690 0.69 -0.7
31,665 + NOLOHH_00690 0.69 +0.7
31,665 + NOLOHH_00690 0.69 -1.0
31,666 - NOLOHH_00690 0.69 +1.2
31,668 + NOLOHH_00690 0.70 -0.4
31,669 - NOLOHH_00690 0.70 -0.9
31,752 + NOLOHH_00690 0.80 +0.1
31,752 + NOLOHH_00690 0.80 +1.6
31,753 - NOLOHH_00690 0.80 +2.0
31,792 + NOLOHH_00690 0.84 +1.0
31,794 + NOLOHH_00690 0.85 +0.6
31,803 + NOLOHH_00690 0.86 +1.1
31,807 + NOLOHH_00690 0.86 -0.2
31,807 + NOLOHH_00690 0.86 -0.2
31,807 + NOLOHH_00690 0.86 -0.7
31,807 + NOLOHH_00690 0.86 -0.6
31,807 + NOLOHH_00690 0.86 +0.8
31,844 - -0.2
31,893 + +0.0

Or see this region's nucleotide sequence