Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00375 and NOLOHH_00380 are separated by 93 nucleotides NOLOHH_00380 and NOLOHH_00385 overlap by 11 nucleotides NOLOHH_00385 and NOLOHH_00390 are separated by 8 nucleotides NOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides
NOLOHH_00375: NOLOHH_00375 - hypothetical protein, at 22,127 to 22,456
_00375
NOLOHH_00380: NOLOHH_00380 - hypothetical protein, at 22,550 to 22,792
_00380
NOLOHH_00385: NOLOHH_00385 - hypothetical protein, at 22,782 to 23,051
_00385
NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608
_00390
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
Position (kb) 23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 22.129 kb on - strand at 22.132 kb on - strand at 22.135 kb on - strand at 22.135 kb on - strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.555 kb on + strand at 22.636 kb on - strand, within NOLOHH_00380 at 22.815 kb on - strand, within NOLOHH_00385 at 23.022 kb on - strand, within NOLOHH_00385 at 23.118 kb on - strand, within NOLOHH_00390 at 23.121 kb on - strand, within NOLOHH_00390 at 23.284 kb on - strand, within NOLOHH_00390 at 23.414 kb on - strand, within NOLOHH_00390 at 23.418 kb on - strand, within NOLOHH_00390 at 23.462 kb on + strand, within NOLOHH_00390 at 23.465 kb on - strand, within NOLOHH_00390 at 23.634 kb on - strand at 23.655 kb on + strand at 23.656 kb on - strand at 23.740 kb on - strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.840 kb on - strand, within NOLOHH_00395 at 23.867 kb on - strand, within NOLOHH_00395 at 23.945 kb on - strand, within NOLOHH_00395 at 23.974 kb on - strand, within NOLOHH_00395 at 24.103 kb on - strand, within NOLOHH_00395 at 24.124 kb on - strand, within NOLOHH_00395 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 22,129 - -1.0 22,132 - -1.2 22,135 - -0.9 22,135 - -0.1 22,512 + -1.7 22,512 + -0.2 22,555 + +0.3 22,636 - NOLOHH_00380 0.35 +0.3 22,815 - NOLOHH_00385 0.12 +0.2 23,022 - NOLOHH_00385 0.89 +0.8 23,118 - NOLOHH_00390 0.11 -0.3 23,121 - NOLOHH_00390 0.11 -0.1 23,284 - NOLOHH_00390 0.41 -0.3 23,414 - NOLOHH_00390 0.64 +0.0 23,418 - NOLOHH_00390 0.65 -0.2 23,462 + NOLOHH_00390 0.73 -2.8 23,465 - NOLOHH_00390 0.74 -0.1 23,634 - -0.1 23,655 + +0.7 23,656 - -0.3 23,740 - NOLOHH_00395 0.11 +0.1 23,791 + NOLOHH_00395 0.21 +1.6 23,791 + NOLOHH_00395 0.21 -0.0 23,840 - NOLOHH_00395 0.31 +0.1 23,867 - NOLOHH_00395 0.36 -0.2 23,945 - NOLOHH_00395 0.51 +0.5 23,974 - NOLOHH_00395 0.57 +0.1 24,103 - NOLOHH_00395 0.82 -0.1 24,124 - NOLOHH_00395 0.86 -0.2 24,177 - -0.9 24,296 - -0.0 24,376 + +0.2 24,376 + +0.1 24,377 - -0.5 24,380 + +1.0 24,380 + -0.4 24,381 - -0.7 24,437 - -0.3 24,437 - -0.0 24,526 + +0.2 24,581 - -0.3 24,581 - -0.2 24,581 - +0.5 24,581 - -0.1 24,581 - -0.6 24,585 + -1.0 24,586 - +0.1 24,591 + +0.5 24,592 - +0.1 24,596 + -0.2 24,596 + +0.1 24,596 + +0.6 24,596 + -0.4 24,596 + +0.0 24,596 + +0.5 24,596 + -0.0 24,597 - +0.4 24,597 - -1.3 24,597 - -0.3 24,597 - -0.0 24,597 - -0.0 24,597 - -0.7 24,597 - +1.0 24,597 - +0.9 24,597 - +0.0 24,597 - +0.8 24,597 - +0.5 24,597 - +0.7 24,597 - +0.0 24,597 - -1.0 24,597 - -0.7 24,602 + +0.1 24,602 + -0.0 24,602 + +0.1 24,602 + -0.5 24,602 + +1.9 24,602 + +0.5 24,602 + +0.6 24,602 + +0.1 24,603 - -0.4 24,603 - +0.1 24,603 - -0.6 24,603 - -0.8 24,603 - -1.9 24,603 - -0.0 24,603 - -0.3 24,603 - +0.1 24,603 - -0.6 24,603 - +0.6 24,603 - -0.2 24,603 - -0.2 24,603 - -0.3 24,603 - +0.2 24,608 - +0.0 24,608 - -0.5 24,608 - -0.2
Or see this region's nucleotide sequence