Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00090

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00080 and NOLOHH_00085 are separated by 32 nucleotidesNOLOHH_00085 and NOLOHH_00090 overlap by 20 nucleotidesNOLOHH_00090 and NOLOHH_00095 are separated by 614 nucleotides NOLOHH_00080: NOLOHH_00080 - Resolvase/invertase-type recombinase catalytic domain-containing protein, at 6,074 to 6,658 _00080 NOLOHH_00085: NOLOHH_00085 - replication protein, at 6,691 to 7,578 _00085 NOLOHH_00090: NOLOHH_00090 - hypothetical protein, at 7,559 to 7,741 _00090 NOLOHH_00095: NOLOHH_00095 - DUF192 domain-containing protein, at 8,356 to 8,775 _00095 Position (kb) 7 8Strain fitness (log2 ratio) -1 0 1 2at 6.559 kb on + strand, within NOLOHH_00080at 6.601 kb on + strandat 6.601 kb on + strandat 6.623 kb on + strandat 6.624 kb on - strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.631 kb on + strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.632 kb on - strandat 6.633 kb on + strandat 6.633 kb on + strandat 6.633 kb on + strandat 6.633 kb on + strandat 6.633 kb on + strandat 6.634 kb on - strandat 6.634 kb on - strandat 6.657 kb on - strandat 7.598 kb on - strand, within NOLOHH_00090at 8.028 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.144 kb on + strandat 8.152 kb on + strandat 8.225 kb on + strandat 8.225 kb on + strandat 8.225 kb on + strandat 8.225 kb on + strandat 8.225 kb on + strandat 8.225 kb on + strandat 8.260 kb on + strandat 8.260 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.276 kb on + strandat 8.277 kb on - strandat 8.277 kb on - strandat 8.277 kb on - strandat 8.278 kb on + strandat 8.278 kb on + strandat 8.296 kb on + strandat 8.376 kb on + strandat 8.376 kb on + strandat 8.398 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.456 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.586 kb on + strand, within NOLOHH_00095at 8.625 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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6,559 + NOLOHH_00080 0.83 -0.2
6,601 + -0.0
6,601 + -0.2
6,623 + +0.9
6,624 - -0.6
6,631 + -1.3
6,631 + -0.4
6,631 + +0.3
6,631 + +0.0
6,631 + +0.3
6,631 + -0.0
6,631 + +0.2
6,631 + +1.9
6,631 + -0.0
6,631 + +0.2
6,631 + +0.1
6,631 + +0.2
6,631 + +1.8
6,631 + +0.7
6,631 + +0.8
6,632 - -0.0
6,632 - +0.2
6,632 - +0.2
6,632 - -0.2
6,632 - +1.1
6,632 - -1.0
6,632 - +0.1
6,632 - +0.3
6,632 - +0.7
6,632 - -0.4
6,632 - +0.2
6,632 - +0.9
6,632 - +0.8
6,632 - -0.4
6,632 - +0.6
6,632 - +0.2
6,632 - -0.1
6,632 - -0.0
6,633 + -0.8
6,633 + -0.4
6,633 + +1.6
6,633 + -0.0
6,633 + +0.4
6,634 - +0.2
6,634 - -1.1
6,657 - -0.1
7,598 - NOLOHH_00090 0.21 +0.1
8,028 + -0.3
8,140 + -0.2
8,140 + +0.6
8,140 + +0.4
8,140 + +0.2
8,140 + -0.2
8,140 + -0.5
8,144 + -0.2
8,152 + +0.8
8,225 + -0.0
8,225 + +0.1
8,225 + +0.3
8,225 + +0.8
8,225 + -0.6
8,225 + -0.4
8,260 + -0.3
8,260 + +1.4
8,276 + -0.4
8,276 + +0.7
8,276 + -0.2
8,276 + +0.3
8,276 + -0.0
8,276 + -0.3
8,276 + -1.2
8,277 - +0.4
8,277 - -0.9
8,277 - +0.2
8,278 + -0.5
8,278 + -0.2
8,296 + +0.4
8,376 + -0.9
8,376 + -0.8
8,398 + NOLOHH_00095 0.10 -0.6
8,447 + NOLOHH_00095 0.22 -0.5
8,447 + NOLOHH_00095 0.22 -0.2
8,447 + NOLOHH_00095 0.22 -0.6
8,447 + NOLOHH_00095 0.22 +0.4
8,447 + NOLOHH_00095 0.22 -0.4
8,451 + NOLOHH_00095 0.23 -1.3
8,451 + NOLOHH_00095 0.23 +0.6
8,451 + NOLOHH_00095 0.23 +0.0
8,451 + NOLOHH_00095 0.23 +1.8
8,456 + NOLOHH_00095 0.24 -0.6
8,493 + NOLOHH_00095 0.33 +1.5
8,493 + NOLOHH_00095 0.33 -0.6
8,493 + NOLOHH_00095 0.33 +0.3
8,493 + NOLOHH_00095 0.33 +0.7
8,586 + NOLOHH_00095 0.55 +0.1
8,625 + NOLOHH_00095 0.64 +0.9
8,669 + NOLOHH_00095 0.75 -0.6
8,669 + NOLOHH_00095 0.75 +0.2
8,669 + NOLOHH_00095 0.75 +0.3
8,669 + NOLOHH_00095 0.75 -0.4

Or see this region's nucleotide sequence