Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traI and vapB are separated by 81 nucleotides vapB and vapC overlap by 1 nucleotides vapC and traD are separated by 8 nucleotides traD and traT are separated by 251 nucleotides traT and traS are separated by 13 nucleotides
NOLOHH_24685: traI - conjugative transfer relaxase/helicase TraI, at 75,927 to 81,197
traI
NOLOHH_24695: vapB - toxin-antitoxin system antitoxin VapB, at 81,279 to 81,506
vapB
NOLOHH_24700: vapC - tRNA(fMet)-specific endonuclease VapC, at 81,506 to 81,904
vapC
NOLOHH_24705: traD - type IV conjugative transfer system coupling protein TraD, at 81,913 to 84,102
traD
NOLOHH_24710: traT - TraT complement resistance protein, at 84,354 to 85,085
traT
NOLOHH_24715: traS - conjugal transfer entry exclusion protein TraS, at 85,099 to 85,608
traS
Position (kb) 81
82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.042 kb on - strand at 81.127 kb on + strand at 81.127 kb on + strand at 81.128 kb on - strand at 81.128 kb on - strand at 81.128 kb on - strand at 81.128 kb on - strand at 81.130 kb on + strand at 81.130 kb on + strand at 81.130 kb on + strand at 81.131 kb on - strand at 81.131 kb on - strand at 81.131 kb on - strand at 81.134 kb on + strand at 81.149 kb on - strand at 81.151 kb on + strand at 81.151 kb on + strand at 81.151 kb on + strand at 81.151 kb on + strand at 81.151 kb on + strand at 81.152 kb on - strand at 81.152 kb on - strand at 81.188 kb on + strand at 81.246 kb on + strand at 81.246 kb on + strand at 81.247 kb on - strand at 81.247 kb on - strand at 81.247 kb on - strand at 81.258 kb on - strand at 81.258 kb on - strand at 81.265 kb on + strand at 81.293 kb on - strand at 81.293 kb on - strand at 81.355 kb on + strand, within vapB at 81.459 kb on - strand, within vapB at 81.459 kb on - strand, within vapB at 81.459 kb on - strand, within vapB at 81.544 kb on + strand at 81.636 kb on + strand, within vapC at 81.636 kb on + strand, within vapC at 81.636 kb on + strand, within vapC at 81.636 kb on + strand, within vapC at 81.636 kb on + strand, within vapC at 81.637 kb on - strand, within vapC at 81.638 kb on + strand, within vapC at 81.638 kb on + strand, within vapC at 81.638 kb on + strand, within vapC at 81.638 kb on + strand, within vapC at 81.638 kb on + strand, within vapC at 81.638 kb on + strand, within vapC at 81.639 kb on - strand, within vapC at 81.639 kb on - strand, within vapC at 81.639 kb on - strand, within vapC at 81.639 kb on - strand, within vapC at 81.639 kb on - strand, within vapC at 81.848 kb on - strand, within vapC at 82.340 kb on - strand, within traD at 82.416 kb on + strand, within traD at 82.466 kb on + strand, within traD at 82.466 kb on + strand, within traD at 82.466 kb on + strand, within traD at 82.466 kb on + strand, within traD at 82.467 kb on - strand, within traD at 82.467 kb on - strand, within traD at 82.467 kb on - strand, within traD at 82.502 kb on + strand, within traD at 82.503 kb on - strand, within traD at 82.503 kb on - strand, within traD at 82.556 kb on - strand, within traD at 82.642 kb on - strand, within traD at 82.712 kb on + strand, within traD at 82.712 kb on + strand, within traD at 82.712 kb on + strand, within traD at 82.713 kb on - strand, within traD at 82.713 kb on - strand, within traD at 82.713 kb on - strand, within traD at 82.717 kb on - strand, within traD at 82.717 kb on - strand, within traD at 82.754 kb on + strand, within traD at 82.755 kb on - strand, within traD at 82.954 kb on - strand, within traD at 83.010 kb on + strand, within traD at 83.011 kb on - strand, within traD at 83.063 kb on + strand, within traD at 83.139 kb on + strand, within traD at 83.140 kb on - strand, within traD at 83.152 kb on - strand, within traD at 83.231 kb on + strand, within traD at 83.253 kb on + strand, within traD at 83.316 kb on + strand, within traD at 83.414 kb on + strand, within traD at 83.414 kb on + strand, within traD at 83.415 kb on - strand, within traD at 83.418 kb on - strand, within traD at 83.460 kb on + strand, within traD at 83.460 kb on + strand, within traD at 83.460 kb on + strand, within traD at 83.461 kb on - strand, within traD at 83.480 kb on + strand, within traD at 83.481 kb on - strand, within traD at 83.587 kb on + strand, within traD at 83.740 kb on - strand, within traD at 83.779 kb on + strand, within traD at 83.805 kb on - strand, within traD at 83.805 kb on - strand, within traD at 83.805 kb on - strand, within traD at 83.855 kb on + strand, within traD at 83.856 kb on - strand, within traD at 83.870 kb on - strand, within traD at 83.888 kb on - strand at 84.140 kb on - strand at 84.351 kb on + strand at 84.464 kb on + strand, within traT at 84.464 kb on + strand, within traT at 84.464 kb on + strand, within traT at 84.464 kb on + strand, within traT at 84.464 kb on + strand, within traT at 84.558 kb on - strand, within traT at 84.558 kb on - strand, within traT at 84.561 kb on - strand, within traT at 84.561 kb on - strand, within traT at 84.593 kb on + strand, within traT at 84.594 kb on - strand, within traT at 84.595 kb on + strand, within traT at 84.596 kb on - strand, within traT at 84.596 kb on - strand, within traT at 84.686 kb on + strand, within traT at 84.687 kb on - strand, within traT at 84.687 kb on - strand, within traT at 84.689 kb on - strand, within traT at 84.812 kb on - strand, within traT at 84.815 kb on - strand, within traT at 84.815 kb on - strand, within traT at 84.928 kb on - strand, within traT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 81,042 - +0.2 81,127 + +0.4 81,127 + +1.0 81,128 - -0.3 81,128 - +1.0 81,128 - +1.5 81,128 - +0.4 81,130 + -0.6 81,130 + -0.1 81,130 + +0.4 81,131 - +1.5 81,131 - -0.0 81,131 - +0.1 81,134 + +0.3 81,149 - +0.8 81,151 + -0.0 81,151 + +1.0 81,151 + -0.0 81,151 + +1.0 81,151 + +0.4 81,152 - -0.5 81,152 - -1.4 81,188 + +1.7 81,246 + +0.1 81,246 + +0.4 81,247 - +1.2 81,247 - +0.2 81,247 - +1.2 81,258 - +1.0 81,258 - -0.3 81,265 + +1.5 81,293 - -1.4 81,293 - -1.9 81,355 + vapB NOLOHH_24695 0.33 -0.8 81,459 - vapB NOLOHH_24695 0.79 +1.0 81,459 - vapB NOLOHH_24695 0.79 -0.6 81,459 - vapB NOLOHH_24695 0.79 +1.0 81,544 + +2.2 81,636 + vapC NOLOHH_24700 0.33 -0.0 81,636 + vapC NOLOHH_24700 0.33 -0.0 81,636 + vapC NOLOHH_24700 0.33 -0.6 81,636 + vapC NOLOHH_24700 0.33 -1.2 81,636 + vapC NOLOHH_24700 0.33 +0.1 81,637 - vapC NOLOHH_24700 0.33 -0.9 81,638 + vapC NOLOHH_24700 0.33 -0.0 81,638 + vapC NOLOHH_24700 0.33 -0.3 81,638 + vapC NOLOHH_24700 0.33 +0.8 81,638 + vapC NOLOHH_24700 0.33 +1.4 81,638 + vapC NOLOHH_24700 0.33 +1.9 81,638 + vapC NOLOHH_24700 0.33 +0.7 81,639 - vapC NOLOHH_24700 0.33 +0.6 81,639 - vapC NOLOHH_24700 0.33 -0.2 81,639 - vapC NOLOHH_24700 0.33 -0.5 81,639 - vapC NOLOHH_24700 0.33 -0.0 81,639 - vapC NOLOHH_24700 0.33 -0.2 81,848 - vapC NOLOHH_24700 0.86 +0.1 82,340 - traD NOLOHH_24705 0.19 -1.9 82,416 + traD NOLOHH_24705 0.23 -0.0 82,466 + traD NOLOHH_24705 0.25 +0.5 82,466 + traD NOLOHH_24705 0.25 -0.0 82,466 + traD NOLOHH_24705 0.25 -1.6 82,466 + traD NOLOHH_24705 0.25 +2.0 82,467 - traD NOLOHH_24705 0.25 -0.0 82,467 - traD NOLOHH_24705 0.25 -0.9 82,467 - traD NOLOHH_24705 0.25 -1.0 82,502 + traD NOLOHH_24705 0.27 -0.6 82,503 - traD NOLOHH_24705 0.27 +2.0 82,503 - traD NOLOHH_24705 0.27 +0.8 82,556 - traD NOLOHH_24705 0.29 -0.4 82,642 - traD NOLOHH_24705 0.33 -1.0 82,712 + traD NOLOHH_24705 0.36 +1.0 82,712 + traD NOLOHH_24705 0.36 +1.0 82,712 + traD NOLOHH_24705 0.36 -1.0 82,713 - traD NOLOHH_24705 0.37 +0.5 82,713 - traD NOLOHH_24705 0.37 +1.5 82,713 - traD NOLOHH_24705 0.37 -0.3 82,717 - traD NOLOHH_24705 0.37 +0.1 82,717 - traD NOLOHH_24705 0.37 -0.3 82,754 + traD NOLOHH_24705 0.38 +1.4 82,755 - traD NOLOHH_24705 0.38 +1.0 82,954 - traD NOLOHH_24705 0.48 +0.2 83,010 + traD NOLOHH_24705 0.50 +1.0 83,011 - traD NOLOHH_24705 0.50 -0.6 83,063 + traD NOLOHH_24705 0.53 +1.0 83,139 + traD NOLOHH_24705 0.56 +0.2 83,140 - traD NOLOHH_24705 0.56 -0.2 83,152 - traD NOLOHH_24705 0.57 +1.6 83,231 + traD NOLOHH_24705 0.60 -0.6 83,253 + traD NOLOHH_24705 0.61 -2.0 83,316 + traD NOLOHH_24705 0.64 -0.0 83,414 + traD NOLOHH_24705 0.69 +1.0 83,414 + traD NOLOHH_24705 0.69 +1.0 83,415 - traD NOLOHH_24705 0.69 -0.2 83,418 - traD NOLOHH_24705 0.69 -1.9 83,460 + traD NOLOHH_24705 0.71 +1.0 83,460 + traD NOLOHH_24705 0.71 +0.4 83,460 + traD NOLOHH_24705 0.71 -1.2 83,461 - traD NOLOHH_24705 0.71 -2.4 83,480 + traD NOLOHH_24705 0.72 +1.0 83,481 - traD NOLOHH_24705 0.72 -0.0 83,587 + traD NOLOHH_24705 0.76 -0.0 83,740 - traD NOLOHH_24705 0.83 +0.5 83,779 + traD NOLOHH_24705 0.85 +1.0 83,805 - traD NOLOHH_24705 0.86 -1.6 83,805 - traD NOLOHH_24705 0.86 +0.4 83,805 - traD NOLOHH_24705 0.86 +0.8 83,855 + traD NOLOHH_24705 0.89 +0.8 83,856 - traD NOLOHH_24705 0.89 +0.4 83,870 - traD NOLOHH_24705 0.89 +0.2 83,888 - +0.5 84,140 - +0.4 84,351 + -0.0 84,464 + traT NOLOHH_24710 0.15 -0.0 84,464 + traT NOLOHH_24710 0.15 -0.2 84,464 + traT NOLOHH_24710 0.15 -0.6 84,464 + traT NOLOHH_24710 0.15 -0.6 84,464 + traT NOLOHH_24710 0.15 -0.9 84,558 - traT NOLOHH_24710 0.28 +2.0 84,558 - traT NOLOHH_24710 0.28 +0.1 84,561 - traT NOLOHH_24710 0.28 -0.7 84,561 - traT NOLOHH_24710 0.28 +0.7 84,593 + traT NOLOHH_24710 0.33 +1.0 84,594 - traT NOLOHH_24710 0.33 +1.0 84,595 + traT NOLOHH_24710 0.33 +0.7 84,596 - traT NOLOHH_24710 0.33 -1.0 84,596 - traT NOLOHH_24710 0.33 +0.6 84,686 + traT NOLOHH_24710 0.45 -1.0 84,687 - traT NOLOHH_24710 0.45 -1.4 84,687 - traT NOLOHH_24710 0.45 +1.8 84,689 - traT NOLOHH_24710 0.46 -0.4 84,812 - traT NOLOHH_24710 0.63 -0.3 84,815 - traT NOLOHH_24710 0.63 -1.1 84,815 - traT NOLOHH_24710 0.63 +0.1 84,928 - traT NOLOHH_24710 0.78 +1.6
Or see this region's nucleotide sequence