Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24405

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_24395 and NOLOHH_24400 are separated by 169 nucleotidesNOLOHH_24400 and NOLOHH_24405 are separated by 36 nucleotidesNOLOHH_24405 and NOLOHH_24410 are separated by 68 nucleotides NOLOHH_24395: NOLOHH_24395 - PixF protein, at 25,213 to 25,584 _24395 NOLOHH_24400: NOLOHH_24400 - nuclease PIN, at 25,754 to 26,269 _24400 NOLOHH_24405: NOLOHH_24405 - molecular chaperone, at 26,306 to 27,037 _24405 NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616 _24410 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 25.890 kb on + strand, within NOLOHH_24400at 25.891 kb on - strand, within NOLOHH_24400at 25.921 kb on + strand, within NOLOHH_24400at 26.000 kb on - strand, within NOLOHH_24400at 26.020 kb on + strand, within NOLOHH_24400at 26.021 kb on - strand, within NOLOHH_24400at 26.059 kb on + strand, within NOLOHH_24400at 26.060 kb on - strand, within NOLOHH_24400at 26.060 kb on - strand, within NOLOHH_24400at 26.245 kb on - strandat 26.245 kb on - strandat 26.308 kb on - strandat 26.315 kb on + strandat 26.323 kb on + strandat 26.323 kb on + strandat 26.355 kb on - strandat 26.380 kb on + strand, within NOLOHH_24405at 26.381 kb on - strand, within NOLOHH_24405at 26.381 kb on - strand, within NOLOHH_24405at 26.382 kb on + strand, within NOLOHH_24405at 26.382 kb on + strand, within NOLOHH_24405at 26.392 kb on - strand, within NOLOHH_24405at 26.404 kb on - strand, within NOLOHH_24405at 26.502 kb on - strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.515 kb on - strand, within NOLOHH_24405at 26.515 kb on - strand, within NOLOHH_24405at 26.602 kb on + strand, within NOLOHH_24405at 26.616 kb on + strand, within NOLOHH_24405at 26.627 kb on + strand, within NOLOHH_24405at 26.628 kb on - strand, within NOLOHH_24405at 26.665 kb on + strand, within NOLOHH_24405at 26.764 kb on + strand, within NOLOHH_24405at 26.764 kb on + strand, within NOLOHH_24405at 26.765 kb on - strand, within NOLOHH_24405at 26.765 kb on - strand, within NOLOHH_24405at 26.868 kb on + strand, within NOLOHH_24405at 26.975 kb on + strandat 26.976 kb on - strandat 27.079 kb on + strandat 27.079 kb on + strandat 27.080 kb on - strandat 27.099 kb on + strandat 27.099 kb on + strandat 27.100 kb on - strandat 27.100 kb on - strandat 27.352 kb on - strandat 27.479 kb on + strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.731 kb on + strand, within NOLOHH_24410at 27.731 kb on + strand, within NOLOHH_24410at 27.732 kb on - strand, within NOLOHH_24410at 27.735 kb on - strand, within NOLOHH_24410at 27.798 kb on - strand, within NOLOHH_24410at 27.798 kb on - strand, within NOLOHH_24410at 27.830 kb on + strand, within NOLOHH_24410at 27.830 kb on + strand, within NOLOHH_24410at 27.876 kb on - strand, within NOLOHH_24410at 27.876 kb on - strand, within NOLOHH_24410at 27.979 kb on - strand, within NOLOHH_24410at 28.025 kb on + strand, within NOLOHH_24410at 28.025 kb on + strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.028 kb on + strand, within NOLOHH_24410at 28.029 kb on - strand, within NOLOHH_24410

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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25,890 + NOLOHH_24400 0.26 -0.0
25,891 - NOLOHH_24400 0.27 -1.0
25,921 + NOLOHH_24400 0.32 -0.3
26,000 - NOLOHH_24400 0.48 +2.0
26,020 + NOLOHH_24400 0.52 +1.0
26,021 - NOLOHH_24400 0.52 -0.0
26,059 + NOLOHH_24400 0.59 -0.9
26,060 - NOLOHH_24400 0.59 -0.0
26,060 - NOLOHH_24400 0.59 -1.0
26,245 - +1.2
26,245 - +1.0
26,308 - +2.0
26,315 + -1.6
26,323 + +1.4
26,323 + +0.6
26,355 - +1.0
26,380 + NOLOHH_24405 0.10 +1.4
26,381 - NOLOHH_24405 0.10 -0.4
26,381 - NOLOHH_24405 0.10 -1.0
26,382 + NOLOHH_24405 0.10 +0.6
26,382 + NOLOHH_24405 0.10 -0.4
26,392 - NOLOHH_24405 0.12 -0.4
26,404 - NOLOHH_24405 0.13 -1.4
26,502 - NOLOHH_24405 0.27 +0.1
26,511 + NOLOHH_24405 0.28 -1.9
26,511 + NOLOHH_24405 0.28 +1.4
26,511 + NOLOHH_24405 0.28 +1.7
26,512 - NOLOHH_24405 0.28 -2.2
26,512 - NOLOHH_24405 0.28 -1.0
26,512 - NOLOHH_24405 0.28 -0.3
26,515 - NOLOHH_24405 0.29 -0.4
26,515 - NOLOHH_24405 0.29 +1.3
26,602 + NOLOHH_24405 0.40 -1.4
26,616 + NOLOHH_24405 0.42 +0.6
26,627 + NOLOHH_24405 0.44 -0.0
26,628 - NOLOHH_24405 0.44 -0.6
26,665 + NOLOHH_24405 0.49 -0.5
26,764 + NOLOHH_24405 0.63 +1.5
26,764 + NOLOHH_24405 0.63 +0.8
26,765 - NOLOHH_24405 0.63 +0.5
26,765 - NOLOHH_24405 0.63 +1.7
26,868 + NOLOHH_24405 0.77 +0.5
26,975 + -1.2
26,976 - +1.0
27,079 + +1.0
27,079 + +2.0
27,080 - -0.0
27,099 + -0.6
27,099 + +1.7
27,100 - +1.0
27,100 - -1.0
27,352 - -0.6
27,479 + NOLOHH_24410 0.15 +0.4
27,480 - NOLOHH_24410 0.15 +0.3
27,480 - NOLOHH_24410 0.15 -0.1
27,480 - NOLOHH_24410 0.15 -1.6
27,480 - NOLOHH_24410 0.15 +1.4
27,731 + NOLOHH_24410 0.25 -1.9
27,731 + NOLOHH_24410 0.25 +0.5
27,732 - NOLOHH_24410 0.25 +1.0
27,735 - NOLOHH_24410 0.25 -1.4
27,798 - NOLOHH_24410 0.28 -1.6
27,798 - NOLOHH_24410 0.28 -0.9
27,830 + NOLOHH_24410 0.29 +0.3
27,830 + NOLOHH_24410 0.29 -0.2
27,876 - NOLOHH_24410 0.31 +1.3
27,876 - NOLOHH_24410 0.31 +1.4
27,979 - NOLOHH_24410 0.35 +0.3
28,025 + NOLOHH_24410 0.37 +0.4
28,025 + NOLOHH_24410 0.37 +1.0
28,026 - NOLOHH_24410 0.37 +0.1
28,026 - NOLOHH_24410 0.37 -0.4
28,026 - NOLOHH_24410 0.37 +0.1
28,028 + NOLOHH_24410 0.37 +0.5
28,029 - NOLOHH_24410 0.37 -0.4

Or see this region's nucleotide sequence