Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mrdB and rlpA are separated by 10 nucleotides rlpA and dacA are separated by 66 nucleotides
NOLOHH_23745: mrdB - peptidoglycan glycosyltransferase MrdB, at 4,673,608 to 4,674,720
mrdB
NOLOHH_23750: rlpA - endolytic peptidoglycan transglycosylase RlpA, at 4,674,731 to 4,675,819
rlpA
NOLOHH_23755: dacA - D-alanyl-D-alanine carboxypeptidase DacA, at 4,675,886 to 4,677,169
dacA
Position (kb) 4674
4675
4676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4674.784 kb on + strand at 4674.834 kb on + strand at 4674.834 kb on + strand at 4674.986 kb on + strand, within rlpA at 4674.986 kb on + strand, within rlpA at 4674.987 kb on - strand, within rlpA at 4675.165 kb on + strand, within rlpA at 4675.199 kb on - strand, within rlpA at 4675.274 kb on - strand, within rlpA at 4675.282 kb on + strand, within rlpA at 4675.304 kb on + strand, within rlpA at 4675.467 kb on + strand, within rlpA at 4675.603 kb on + strand, within rlpA at 4675.604 kb on - strand, within rlpA at 4675.604 kb on - strand, within rlpA at 4675.604 kb on - strand, within rlpA at 4675.791 kb on + strand at 4675.801 kb on + strand at 4675.801 kb on + strand at 4675.801 kb on + strand at 4675.801 kb on + strand at 4675.802 kb on - strand at 4675.802 kb on - strand at 4675.818 kb on - strand at 4675.822 kb on + strand at 4675.911 kb on + strand at 4675.911 kb on + strand at 4675.911 kb on + strand at 4675.911 kb on + strand at 4675.912 kb on - strand at 4675.947 kb on + strand at 4675.947 kb on + strand at 4675.982 kb on - strand at 4676.027 kb on - strand, within dacA at 4676.027 kb on - strand, within dacA at 4676.065 kb on + strand, within dacA at 4676.102 kb on + strand, within dacA at 4676.118 kb on - strand, within dacA at 4676.118 kb on - strand, within dacA at 4676.119 kb on + strand, within dacA at 4676.198 kb on + strand, within dacA at 4676.199 kb on - strand, within dacA at 4676.199 kb on - strand, within dacA at 4676.362 kb on + strand, within dacA at 4676.450 kb on + strand, within dacA at 4676.450 kb on + strand, within dacA at 4676.450 kb on + strand, within dacA at 4676.451 kb on - strand, within dacA at 4676.451 kb on - strand, within dacA at 4676.493 kb on + strand, within dacA at 4676.536 kb on + strand, within dacA at 4676.591 kb on + strand, within dacA at 4676.593 kb on + strand, within dacA at 4676.621 kb on - strand, within dacA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,674,784 + +0.5 4,674,834 + +1.0 4,674,834 + -0.5 4,674,986 + rlpA NOLOHH_23750 0.23 -0.5 4,674,986 + rlpA NOLOHH_23750 0.23 +0.9 4,674,987 - rlpA NOLOHH_23750 0.24 -1.1 4,675,165 + rlpA NOLOHH_23750 0.40 +1.1 4,675,199 - rlpA NOLOHH_23750 0.43 -0.3 4,675,274 - rlpA NOLOHH_23750 0.50 +0.9 4,675,282 + rlpA NOLOHH_23750 0.51 -0.3 4,675,304 + rlpA NOLOHH_23750 0.53 -0.1 4,675,467 + rlpA NOLOHH_23750 0.68 -0.5 4,675,603 + rlpA NOLOHH_23750 0.80 -0.6 4,675,604 - rlpA NOLOHH_23750 0.80 +0.8 4,675,604 - rlpA NOLOHH_23750 0.80 +1.5 4,675,604 - rlpA NOLOHH_23750 0.80 -0.0 4,675,791 + +0.2 4,675,801 + +1.7 4,675,801 + +0.9 4,675,801 + +0.6 4,675,801 + -0.7 4,675,802 - -0.2 4,675,802 - +1.3 4,675,818 - +0.5 4,675,822 + +0.1 4,675,911 + +0.5 4,675,911 + -0.2 4,675,911 + +1.5 4,675,911 + -1.1 4,675,912 - +0.2 4,675,947 + +0.5 4,675,947 + +1.5 4,675,982 - +0.5 4,676,027 - dacA NOLOHH_23755 0.11 +0.5 4,676,027 - dacA NOLOHH_23755 0.11 +1.5 4,676,065 + dacA NOLOHH_23755 0.14 +1.5 4,676,102 + dacA NOLOHH_23755 0.17 +0.2 4,676,118 - dacA NOLOHH_23755 0.18 -0.8 4,676,118 - dacA NOLOHH_23755 0.18 +0.9 4,676,119 + dacA NOLOHH_23755 0.18 +2.5 4,676,198 + dacA NOLOHH_23755 0.24 +0.8 4,676,199 - dacA NOLOHH_23755 0.24 +0.9 4,676,199 - dacA NOLOHH_23755 0.24 +0.9 4,676,362 + dacA NOLOHH_23755 0.37 +1.5 4,676,450 + dacA NOLOHH_23755 0.44 -0.5 4,676,450 + dacA NOLOHH_23755 0.44 +0.9 4,676,450 + dacA NOLOHH_23755 0.44 +0.8 4,676,451 - dacA NOLOHH_23755 0.44 -0.5 4,676,451 - dacA NOLOHH_23755 0.44 +0.5 4,676,493 + dacA NOLOHH_23755 0.47 +0.5 4,676,536 + dacA NOLOHH_23755 0.51 +0.5 4,676,591 + dacA NOLOHH_23755 0.55 +1.3 4,676,593 + dacA NOLOHH_23755 0.55 -2.1 4,676,621 - dacA NOLOHH_23755 0.57 +0.5
Or see this region's nucleotide sequence