Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhH and ybhD are separated by 183 nucleotides ybhD and pgl are separated by 40 nucleotides
NOLOHH_23095: ybhH - 4-oxalomesaconate tautomerase, at 4,542,995 to 4,544,047
ybhH
NOLOHH_23100: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 4,544,231 to 4,545,184
ybhD
NOLOHH_23105: pgl - 6-phosphogluconolactonase, at 4,545,225 to 4,546,220
pgl
Position (kb) 4544
4545
4546 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4543.380 kb on - strand, within ybhH at 4543.666 kb on + strand, within ybhH at 4543.763 kb on - strand, within ybhH at 4543.808 kb on - strand, within ybhH at 4543.808 kb on - strand, within ybhH at 4544.051 kb on - strand at 4544.251 kb on + strand at 4544.291 kb on - strand at 4544.794 kb on - strand, within ybhD at 4544.817 kb on + strand, within ybhD at 4544.847 kb on + strand, within ybhD at 4544.847 kb on + strand, within ybhD at 4544.920 kb on - strand, within ybhD at 4544.926 kb on - strand, within ybhD at 4545.022 kb on + strand, within ybhD at 4545.024 kb on + strand, within ybhD at 4545.178 kb on - strand at 4545.182 kb on + strand at 4545.186 kb on - strand at 4545.227 kb on - strand at 4545.291 kb on + strand at 4545.291 kb on + strand at 4545.292 kb on - strand at 4545.292 kb on - strand at 4545.358 kb on + strand, within pgl at 4545.359 kb on - strand, within pgl at 4545.359 kb on - strand, within pgl at 4545.492 kb on + strand, within pgl at 4545.493 kb on - strand, within pgl at 4545.522 kb on - strand, within pgl at 4545.655 kb on + strand, within pgl at 4545.803 kb on + strand, within pgl at 4545.821 kb on + strand, within pgl at 4545.919 kb on + strand, within pgl at 4545.919 kb on + strand, within pgl at 4545.919 kb on + strand, within pgl at 4545.919 kb on + strand, within pgl at 4545.920 kb on - strand, within pgl at 4545.920 kb on - strand, within pgl at 4545.920 kb on - strand, within pgl at 4545.928 kb on - strand, within pgl at 4545.928 kb on - strand, within pgl at 4545.928 kb on - strand, within pgl at 4545.962 kb on + strand, within pgl at 4545.962 kb on + strand, within pgl at 4545.963 kb on - strand, within pgl at 4545.963 kb on - strand, within pgl at 4545.963 kb on - strand, within pgl at 4546.029 kb on - strand, within pgl
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,543,380 - ybhH NOLOHH_23095 0.37 +2.5 4,543,666 + ybhH NOLOHH_23095 0.64 +0.3 4,543,763 - ybhH NOLOHH_23095 0.73 -1.3 4,543,808 - ybhH NOLOHH_23095 0.77 +0.3 4,543,808 - ybhH NOLOHH_23095 0.77 -0.8 4,544,051 - +1.5 4,544,251 + +0.5 4,544,291 - -1.1 4,544,794 - ybhD NOLOHH_23100 0.59 -2.3 4,544,817 + ybhD NOLOHH_23100 0.61 -0.5 4,544,847 + ybhD NOLOHH_23100 0.65 -1.3 4,544,847 + ybhD NOLOHH_23100 0.65 +0.5 4,544,920 - ybhD NOLOHH_23100 0.72 -1.1 4,544,926 - ybhD NOLOHH_23100 0.73 -0.5 4,545,022 + ybhD NOLOHH_23100 0.83 -0.3 4,545,024 + ybhD NOLOHH_23100 0.83 +0.0 4,545,178 - +0.5 4,545,182 + -0.1 4,545,186 - +0.5 4,545,227 - -0.1 4,545,291 + -0.5 4,545,291 + -0.3 4,545,292 - +1.0 4,545,292 - +0.5 4,545,358 + pgl NOLOHH_23105 0.13 +0.2 4,545,359 - pgl NOLOHH_23105 0.13 -0.5 4,545,359 - pgl NOLOHH_23105 0.13 +0.9 4,545,492 + pgl NOLOHH_23105 0.27 -1.1 4,545,493 - pgl NOLOHH_23105 0.27 -1.3 4,545,522 - pgl NOLOHH_23105 0.30 +0.1 4,545,655 + pgl NOLOHH_23105 0.43 +0.5 4,545,803 + pgl NOLOHH_23105 0.58 -1.1 4,545,821 + pgl NOLOHH_23105 0.60 -1.9 4,545,919 + pgl NOLOHH_23105 0.70 -0.3 4,545,919 + pgl NOLOHH_23105 0.70 -1.9 4,545,919 + pgl NOLOHH_23105 0.70 -1.0 4,545,919 + pgl NOLOHH_23105 0.70 -0.5 4,545,920 - pgl NOLOHH_23105 0.70 -0.5 4,545,920 - pgl NOLOHH_23105 0.70 -0.2 4,545,920 - pgl NOLOHH_23105 0.70 -1.1 4,545,928 - pgl NOLOHH_23105 0.71 -0.3 4,545,928 - pgl NOLOHH_23105 0.71 +1.2 4,545,928 - pgl NOLOHH_23105 0.71 -0.5 4,545,962 + pgl NOLOHH_23105 0.74 +1.5 4,545,962 + pgl NOLOHH_23105 0.74 -0.8 4,545,963 - pgl NOLOHH_23105 0.74 -0.5 4,545,963 - pgl NOLOHH_23105 0.74 -0.3 4,545,963 - pgl NOLOHH_23105 0.74 -0.5 4,546,029 - pgl NOLOHH_23105 0.81 -0.5
Or see this region's nucleotide sequence