Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22940

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22930 and ninB overlap by 4 nucleotidesninB and NOLOHH_22940 overlap by 4 nucleotidesNOLOHH_22940 and ren overlap by 4 nucleotidesren and NOLOHH_22950 overlap by 4 nucleotidesNOLOHH_22950 and NOLOHH_22955 overlap by 4 nucleotides NOLOHH_22930: NOLOHH_22930 - phage N-6-adenine-methyltransferase, at 4,522,212 to 4,522,739 _22930 NOLOHH_22935: ninB - Protein ninB, at 4,522,736 to 4,523,176 ninB NOLOHH_22940: NOLOHH_22940 - NinA, at 4,523,173 to 4,523,253 _22940 NOLOHH_22945: ren - Protein ren, at 4,523,250 to 4,523,540 ren NOLOHH_22950: NOLOHH_22950 - Replication protein P, at 4,523,537 to 4,524,238 _22950 NOLOHH_22955: NOLOHH_22955 - Replication protein O, at 4,524,235 to 4,525,134 _22955 Position (kb) 4523 4524Strain fitness (log2 ratio) -2 -1 0 1 2at 4522.183 kb on + strandat 4522.183 kb on + strandat 4522.183 kb on + strandat 4522.269 kb on - strand, within NOLOHH_22930at 4522.442 kb on + strand, within NOLOHH_22930at 4522.460 kb on + strand, within NOLOHH_22930at 4522.460 kb on + strand, within NOLOHH_22930at 4522.461 kb on - strand, within NOLOHH_22930at 4522.461 kb on - strand, within NOLOHH_22930at 4522.461 kb on - strand, within NOLOHH_22930at 4522.461 kb on - strand, within NOLOHH_22930at 4522.461 kb on - strand, within NOLOHH_22930at 4522.482 kb on + strand, within NOLOHH_22930at 4522.482 kb on + strand, within NOLOHH_22930at 4522.482 kb on + strand, within NOLOHH_22930at 4522.483 kb on - strand, within NOLOHH_22930at 4522.483 kb on - strand, within NOLOHH_22930at 4522.538 kb on + strand, within NOLOHH_22930at 4522.539 kb on - strand, within NOLOHH_22930at 4522.561 kb on - strand, within NOLOHH_22930at 4522.722 kb on - strandat 4522.733 kb on + strandat 4522.830 kb on - strand, within ninBat 4522.830 kb on - strand, within ninBat 4522.830 kb on - strand, within ninBat 4522.832 kb on - strand, within ninBat 4522.887 kb on - strand, within ninBat 4522.938 kb on - strand, within ninBat 4523.019 kb on - strand, within ninBat 4523.019 kb on - strand, within ninBat 4523.019 kb on - strand, within ninBat 4523.019 kb on - strand, within ninBat 4523.030 kb on + strand, within ninBat 4523.075 kb on + strand, within ninBat 4523.078 kb on + strand, within ninBat 4523.079 kb on - strand, within ninBat 4523.165 kb on + strandat 4523.196 kb on + strand, within NOLOHH_22940at 4523.228 kb on - strand, within NOLOHH_22940at 4523.231 kb on - strand, within NOLOHH_22940at 4523.239 kb on - strand, within NOLOHH_22940at 4523.243 kb on + strand, within NOLOHH_22940at 4523.243 kb on + strand, within NOLOHH_22940at 4523.244 kb on - strand, within NOLOHH_22940at 4523.244 kb on - strand, within NOLOHH_22940at 4523.266 kb on + strandat 4523.266 kb on + strandat 4523.266 kb on + strandat 4523.371 kb on + strand, within renat 4523.372 kb on - strand, within renat 4523.442 kb on + strand, within renat 4523.443 kb on - strand, within renat 4523.495 kb on + strand, within renat 4523.495 kb on + strand, within renat 4523.496 kb on - strand, within renat 4523.496 kb on - strand, within renat 4523.499 kb on - strand, within renat 4523.499 kb on - strand, within renat 4523.541 kb on - strandat 4523.567 kb on - strandat 4523.642 kb on + strand, within NOLOHH_22950at 4523.672 kb on - strand, within NOLOHH_22950at 4523.672 kb on - strand, within NOLOHH_22950at 4523.717 kb on + strand, within NOLOHH_22950at 4523.732 kb on - strand, within NOLOHH_22950at 4523.732 kb on - strand, within NOLOHH_22950at 4523.841 kb on + strand, within NOLOHH_22950at 4523.842 kb on - strand, within NOLOHH_22950at 4523.847 kb on + strand, within NOLOHH_22950at 4523.847 kb on + strand, within NOLOHH_22950at 4523.855 kb on - strand, within NOLOHH_22950at 4524.099 kb on - strand, within NOLOHH_22950at 4524.212 kb on - strandat 4524.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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4,522,183 + +0.5
4,522,183 + -1.1
4,522,183 + +0.1
4,522,269 - NOLOHH_22930 0.11 +1.1
4,522,442 + NOLOHH_22930 0.44 +0.9
4,522,460 + NOLOHH_22930 0.47 -0.9
4,522,460 + NOLOHH_22930 0.47 +0.6
4,522,461 - NOLOHH_22930 0.47 +1.5
4,522,461 - NOLOHH_22930 0.47 -0.0
4,522,461 - NOLOHH_22930 0.47 -0.1
4,522,461 - NOLOHH_22930 0.47 -0.8
4,522,461 - NOLOHH_22930 0.47 +0.9
4,522,482 + NOLOHH_22930 0.51 -0.7
4,522,482 + NOLOHH_22930 0.51 -1.1
4,522,482 + NOLOHH_22930 0.51 -0.1
4,522,483 - NOLOHH_22930 0.51 +0.6
4,522,483 - NOLOHH_22930 0.51 +0.3
4,522,538 + NOLOHH_22930 0.62 +2.3
4,522,539 - NOLOHH_22930 0.62 -1.8
4,522,561 - NOLOHH_22930 0.66 +0.8
4,522,722 - +0.5
4,522,733 + +0.5
4,522,830 - ninB NOLOHH_22935 0.21 -1.1
4,522,830 - ninB NOLOHH_22935 0.21 -1.2
4,522,830 - ninB NOLOHH_22935 0.21 -0.8
4,522,832 - ninB NOLOHH_22935 0.22 +0.1
4,522,887 - ninB NOLOHH_22935 0.34 -0.9
4,522,938 - ninB NOLOHH_22935 0.46 -1.3
4,523,019 - ninB NOLOHH_22935 0.64 +1.9
4,523,019 - ninB NOLOHH_22935 0.64 +0.1
4,523,019 - ninB NOLOHH_22935 0.64 -1.5
4,523,019 - ninB NOLOHH_22935 0.64 +1.5
4,523,030 + ninB NOLOHH_22935 0.67 +0.5
4,523,075 + ninB NOLOHH_22935 0.77 +0.2
4,523,078 + ninB NOLOHH_22935 0.78 -0.1
4,523,079 - ninB NOLOHH_22935 0.78 -0.0
4,523,165 + -0.7
4,523,196 + NOLOHH_22940 0.28 -0.3
4,523,228 - NOLOHH_22940 0.68 -0.3
4,523,231 - NOLOHH_22940 0.72 -2.1
4,523,239 - NOLOHH_22940 0.81 -0.7
4,523,243 + NOLOHH_22940 0.86 +2.1
4,523,243 + NOLOHH_22940 0.86 -0.4
4,523,244 - NOLOHH_22940 0.88 -0.7
4,523,244 - NOLOHH_22940 0.88 -1.7
4,523,266 + +0.5
4,523,266 + +0.1
4,523,266 + -0.2
4,523,371 + ren NOLOHH_22945 0.42 +1.2
4,523,372 - ren NOLOHH_22945 0.42 +0.5
4,523,442 + ren NOLOHH_22945 0.66 +1.1
4,523,443 - ren NOLOHH_22945 0.66 +0.5
4,523,495 + ren NOLOHH_22945 0.84 -0.7
4,523,495 + ren NOLOHH_22945 0.84 +1.1
4,523,496 - ren NOLOHH_22945 0.85 +1.1
4,523,496 - ren NOLOHH_22945 0.85 -1.5
4,523,499 - ren NOLOHH_22945 0.86 -0.3
4,523,499 - ren NOLOHH_22945 0.86 -0.9
4,523,541 - -0.7
4,523,567 - +0.9
4,523,642 + NOLOHH_22950 0.15 +1.5
4,523,672 - NOLOHH_22950 0.19 +1.3
4,523,672 - NOLOHH_22950 0.19 -0.0
4,523,717 + NOLOHH_22950 0.26 -0.8
4,523,732 - NOLOHH_22950 0.28 +0.9
4,523,732 - NOLOHH_22950 0.28 -0.1
4,523,841 + NOLOHH_22950 0.43 +1.1
4,523,842 - NOLOHH_22950 0.43 +0.8
4,523,847 + NOLOHH_22950 0.44 +0.9
4,523,847 + NOLOHH_22950 0.44 +0.5
4,523,855 - NOLOHH_22950 0.45 -0.8
4,524,099 - NOLOHH_22950 0.80 -1.6
4,524,212 - -0.9
4,524,251 + +0.2

Or see this region's nucleotide sequence