Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22855

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_22850 and NOLOHH_22855 are separated by 38 nucleotidesNOLOHH_22855 and NOLOHH_22860 overlap by 4 nucleotides NOLOHH_22850: NOLOHH_22850 - portal protein, at 4,512,246 to 4,514,336 _22850 NOLOHH_22855: NOLOHH_22855 - PBSX family phage terminase large subunit, at 4,514,375 to 4,515,787 _22855 NOLOHH_22860: NOLOHH_22860 - terminase small subunit, at 4,515,784 to 4,516,311 _22860 Position (kb) 4514 4515 4516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4513.458 kb on - strand, within NOLOHH_22850at 4513.515 kb on + strand, within NOLOHH_22850at 4513.515 kb on + strand, within NOLOHH_22850at 4513.515 kb on + strand, within NOLOHH_22850at 4513.519 kb on + strand, within NOLOHH_22850at 4513.519 kb on + strand, within NOLOHH_22850at 4513.520 kb on - strand, within NOLOHH_22850at 4513.520 kb on - strand, within NOLOHH_22850at 4513.520 kb on - strand, within NOLOHH_22850at 4513.520 kb on - strand, within NOLOHH_22850at 4513.570 kb on - strand, within NOLOHH_22850at 4513.589 kb on + strand, within NOLOHH_22850at 4513.613 kb on - strand, within NOLOHH_22850at 4513.696 kb on + strand, within NOLOHH_22850at 4513.697 kb on - strand, within NOLOHH_22850at 4513.697 kb on - strand, within NOLOHH_22850at 4513.700 kb on + strand, within NOLOHH_22850at 4513.700 kb on + strand, within NOLOHH_22850at 4513.740 kb on - strand, within NOLOHH_22850at 4513.740 kb on - strand, within NOLOHH_22850at 4513.747 kb on - strand, within NOLOHH_22850at 4513.747 kb on - strand, within NOLOHH_22850at 4513.891 kb on + strand, within NOLOHH_22850at 4513.892 kb on - strand, within NOLOHH_22850at 4513.892 kb on - strand, within NOLOHH_22850at 4513.892 kb on - strand, within NOLOHH_22850at 4513.892 kb on - strand, within NOLOHH_22850at 4513.910 kb on + strand, within NOLOHH_22850at 4514.074 kb on - strand, within NOLOHH_22850at 4514.216 kb on + strandat 4514.358 kb on + strandat 4514.362 kb on - strandat 4514.362 kb on - strandat 4514.400 kb on + strandat 4514.401 kb on - strandat 4514.401 kb on - strandat 4514.401 kb on - strandat 4514.440 kb on + strandat 4514.441 kb on - strandat 4514.441 kb on - strandat 4514.441 kb on - strandat 4514.637 kb on + strand, within NOLOHH_22855at 4514.638 kb on - strand, within NOLOHH_22855at 4514.661 kb on + strand, within NOLOHH_22855at 4514.692 kb on - strand, within NOLOHH_22855at 4514.695 kb on - strand, within NOLOHH_22855at 4514.785 kb on - strand, within NOLOHH_22855at 4514.910 kb on + strand, within NOLOHH_22855at 4514.910 kb on + strand, within NOLOHH_22855at 4514.998 kb on + strand, within NOLOHH_22855at 4515.031 kb on + strand, within NOLOHH_22855at 4515.046 kb on + strand, within NOLOHH_22855at 4515.046 kb on + strand, within NOLOHH_22855at 4515.192 kb on + strand, within NOLOHH_22855at 4515.193 kb on - strand, within NOLOHH_22855at 4515.268 kb on - strand, within NOLOHH_22855at 4515.306 kb on - strand, within NOLOHH_22855at 4515.321 kb on + strand, within NOLOHH_22855at 4515.321 kb on + strand, within NOLOHH_22855at 4515.322 kb on - strand, within NOLOHH_22855at 4515.362 kb on + strand, within NOLOHH_22855at 4515.469 kb on + strand, within NOLOHH_22855at 4515.469 kb on + strand, within NOLOHH_22855at 4515.498 kb on + strand, within NOLOHH_22855at 4515.499 kb on - strand, within NOLOHH_22855at 4515.581 kb on + strand, within NOLOHH_22855at 4515.649 kb on + strandat 4515.649 kb on + strandat 4515.706 kb on + strandat 4515.707 kb on - strandat 4515.739 kb on - strandat 4515.739 kb on - strandat 4515.770 kb on - strandat 4515.873 kb on + strand, within NOLOHH_22860at 4515.874 kb on - strand, within NOLOHH_22860at 4515.925 kb on - strand, within NOLOHH_22860at 4516.017 kb on + strand, within NOLOHH_22860at 4516.092 kb on + strand, within NOLOHH_22860at 4516.110 kb on - strand, within NOLOHH_22860at 4516.122 kb on + strand, within NOLOHH_22860at 4516.210 kb on - strand, within NOLOHH_22860at 4516.316 kb on + strandat 4516.316 kb on + strandat 4516.325 kb on + strandat 4516.329 kb on + strandat 4516.329 kb on + strandat 4516.338 kb on + strandat 4516.339 kb on - strandat 4516.346 kb on + strandat 4516.399 kb on + strandat 4516.407 kb on + strandat 4516.407 kb on + strandat 4516.461 kb on + strandat 4516.591 kb on + strandat 4516.625 kb on + strandat 4516.637 kb on - strandat 4516.661 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
4,513,458 - NOLOHH_22850 0.58 +0.7
4,513,515 + NOLOHH_22850 0.61 +0.5
4,513,515 + NOLOHH_22850 0.61 -0.1
4,513,515 + NOLOHH_22850 0.61 -1.5
4,513,519 + NOLOHH_22850 0.61 -0.9
4,513,519 + NOLOHH_22850 0.61 +0.5
4,513,520 - NOLOHH_22850 0.61 +0.3
4,513,520 - NOLOHH_22850 0.61 +0.5
4,513,520 - NOLOHH_22850 0.61 +0.8
4,513,520 - NOLOHH_22850 0.61 +0.5
4,513,570 - NOLOHH_22850 0.63 -0.5
4,513,589 + NOLOHH_22850 0.64 -0.1
4,513,613 - NOLOHH_22850 0.65 -0.1
4,513,696 + NOLOHH_22850 0.69 +0.8
4,513,697 - NOLOHH_22850 0.69 -1.5
4,513,697 - NOLOHH_22850 0.69 -3.1
4,513,700 + NOLOHH_22850 0.70 -0.1
4,513,700 + NOLOHH_22850 0.70 -0.5
4,513,740 - NOLOHH_22850 0.71 -0.1
4,513,740 - NOLOHH_22850 0.71 -1.1
4,513,747 - NOLOHH_22850 0.72 +0.9
4,513,747 - NOLOHH_22850 0.72 +0.5
4,513,891 + NOLOHH_22850 0.79 +0.9
4,513,892 - NOLOHH_22850 0.79 -0.9
4,513,892 - NOLOHH_22850 0.79 -0.1
4,513,892 - NOLOHH_22850 0.79 -1.5
4,513,892 - NOLOHH_22850 0.79 -1.2
4,513,910 + NOLOHH_22850 0.80 +1.1
4,514,074 - NOLOHH_22850 0.87 +0.7
4,514,216 + -0.5
4,514,358 + -1.8
4,514,362 - -1.1
4,514,362 - -0.5
4,514,400 + +1.5
4,514,401 - -1.2
4,514,401 - -0.3
4,514,401 - -0.9
4,514,440 + +0.5
4,514,441 - +1.1
4,514,441 - -0.4
4,514,441 - -1.7
4,514,637 + NOLOHH_22855 0.19 -0.5
4,514,638 - NOLOHH_22855 0.19 -0.3
4,514,661 + NOLOHH_22855 0.20 -0.1
4,514,692 - NOLOHH_22855 0.22 -1.4
4,514,695 - NOLOHH_22855 0.23 +0.8
4,514,785 - NOLOHH_22855 0.29 +1.2
4,514,910 + NOLOHH_22855 0.38 +0.5
4,514,910 + NOLOHH_22855 0.38 -1.1
4,514,998 + NOLOHH_22855 0.44 -1.1
4,515,031 + NOLOHH_22855 0.46 +0.5
4,515,046 + NOLOHH_22855 0.47 +0.5
4,515,046 + NOLOHH_22855 0.47 -1.7
4,515,192 + NOLOHH_22855 0.58 +0.8
4,515,193 - NOLOHH_22855 0.58 -0.2
4,515,268 - NOLOHH_22855 0.63 -2.1
4,515,306 - NOLOHH_22855 0.66 -1.5
4,515,321 + NOLOHH_22855 0.67 +0.5
4,515,321 + NOLOHH_22855 0.67 +0.3
4,515,322 - NOLOHH_22855 0.67 -1.7
4,515,362 + NOLOHH_22855 0.70 -0.1
4,515,469 + NOLOHH_22855 0.77 +1.5
4,515,469 + NOLOHH_22855 0.77 +2.3
4,515,498 + NOLOHH_22855 0.79 +1.5
4,515,499 - NOLOHH_22855 0.80 +0.5
4,515,581 + NOLOHH_22855 0.85 -0.1
4,515,649 + +0.5
4,515,649 + -0.6
4,515,706 + -0.1
4,515,707 - -1.1
4,515,739 - +0.3
4,515,739 - -0.7
4,515,770 - -0.2
4,515,873 + NOLOHH_22860 0.17 +2.1
4,515,874 - NOLOHH_22860 0.17 -1.7
4,515,925 - NOLOHH_22860 0.27 -0.1
4,516,017 + NOLOHH_22860 0.44 +0.1
4,516,092 + NOLOHH_22860 0.58 -0.3
4,516,110 - NOLOHH_22860 0.62 +0.5
4,516,122 + NOLOHH_22860 0.64 +0.3
4,516,210 - NOLOHH_22860 0.81 +0.2
4,516,316 + -2.5
4,516,316 + -2.1
4,516,325 + -0.7
4,516,329 + +0.0
4,516,329 + -0.3
4,516,338 + +0.5
4,516,339 - +2.1
4,516,346 + +1.1
4,516,399 + -0.8
4,516,407 + -0.9
4,516,407 + -0.3
4,516,461 + -0.4
4,516,591 + -1.1
4,516,625 + -0.5
4,516,637 - -0.5
4,516,661 - -1.8

Or see this region's nucleotide sequence