Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22185

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
4,378,920	-	clpA	NOLOHH_22180	0.59	+0.4
4,379,126	-	clpA	NOLOHH_22180	0.68	+0.1
4,379,126	-	clpA	NOLOHH_22180	0.68	-1.2
4,379,358	-	clpA	NOLOHH_22180	0.78	+1.4
4,379,358	-	clpA	NOLOHH_22180	0.78	-1.6
4,379,451	-	clpA	NOLOHH_22180	0.82	-0.9
4,379,498	-	clpA	NOLOHH_22180	0.84	+0.3
4,379,770	-				+0.1
4,379,790	-				+0.4
4,379,910	-				+0.1
4,379,910	-				-0.4
4,379,942	-	clpS	NOLOHH_22185	0.16	+1.2
4,380,049	-	clpS	NOLOHH_22185	0.49	-0.4
4,380,049	-	clpS	NOLOHH_22185	0.49	+0.0
4,380,104	-	clpS	NOLOHH_22185	0.66	-0.7
4,380,121	-	clpS	NOLOHH_22185	0.71	-1.6
4,380,130	+	clpS	NOLOHH_22185	0.74	+0.1
4,380,131	-	clpS	NOLOHH_22185	0.74	+0.9
4,380,131	-	clpS	NOLOHH_22185	0.74	-1.2
4,380,134	+	clpS	NOLOHH_22185	0.75	+0.4
4,380,135	-	clpS	NOLOHH_22185	0.76	+1.3
4,380,135	-	clpS	NOLOHH_22185	0.76	+1.0
4,380,135	-	clpS	NOLOHH_22185	0.76	-0.1
4,380,221	-				+0.4
4,380,273	-				-0.6
4,380,273	-				+0.8
4,380,302	-				-0.9
4,380,305	+				-0.2
4,380,306	-				+0.6
4,380,306	-				+0.1
4,380,306	-				+0.1
4,380,306	-				+0.4
4,380,306	-				+0.4
4,380,385	+				+0.2
4,380,427	+				+1.4
4,380,427	+				+2.4
4,380,492	+				-0.6
4,380,502	+				+1.4
4,380,502	+				+1.0
4,380,502	+				-0.1
4,380,502	+				-0.6
4,380,503	-				-0.7
4,380,503	-				+0.8
4,380,503	-				+0.0
4,380,503	-				-1.1
4,380,508	+				+0.4
4,380,508	+				+0.4
4,380,509	-				+0.4
4,380,509	-				+1.8
4,380,552	+				-0.8
4,380,552	+				+1.1
4,380,552	+				+0.4
4,380,553	-				-1.2
4,380,659	+	cspD	NOLOHH_22195	0.55	+0.2
4,380,660	-	cspD	NOLOHH_22195	0.56	-1.4
4,380,741	-				-0.2
4,380,741	-				+0.0
4,380,741	-				-0.6
4,380,758	-				+2.4
4,380,778	+				+0.1
4,380,778	+				-0.5
4,380,778	+				-0.8
4,380,778	+				+1.0
4,380,778	+				+1.2
4,380,779	-				+1.4
4,380,779	-				-0.6
4,380,853	+				+0.4
4,380,854	-				+0.7
4,380,898	+				-0.2
4,380,898	+				+1.4
4,380,899	-				-0.7
4,381,001	-				+0.0
4,381,097	-	macB	NOLOHH_22200	0.14	+0.8
4,381,150	-	macB	NOLOHH_22200	0.16	-3.4
4,381,152	+	macB	NOLOHH_22200	0.16	+1.0
4,381,153	-	macB	NOLOHH_22200	0.16	-0.3