Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt agp and yccE are separated by 292 nucleotides yccE and cbpA are separated by 260 nucleotides
NOLOHH_21565: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 4,236,816 to 4,238,057
agp
NOLOHH_21570: yccE - YccE family protein, at 4,238,350 to 4,239,606
yccE
NOLOHH_21575: cbpA - curved DNA-binding protein, at 4,239,867 to 4,240,787
cbpA
Position (kb) 4238
4239
4240 Strain fitness (log2 ratio) -1
0
1
2 at 4237.362 kb on + strand, within agp at 4237.363 kb on - strand, within agp at 4237.414 kb on + strand, within agp at 4237.415 kb on - strand, within agp at 4237.415 kb on - strand, within agp at 4237.415 kb on - strand, within agp at 4237.490 kb on - strand, within agp at 4237.517 kb on - strand, within agp at 4237.517 kb on - strand, within agp at 4237.658 kb on + strand, within agp at 4237.735 kb on + strand, within agp at 4237.735 kb on + strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.817 kb on - strand, within agp at 4237.890 kb on - strand, within agp at 4237.932 kb on + strand, within agp at 4237.933 kb on - strand at 4238.161 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.199 kb on + strand at 4238.200 kb on - strand at 4238.369 kb on - strand at 4239.672 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.808 kb on + strand at 4239.810 kb on + strand at 4239.961 kb on - strand, within cbpA at 4239.961 kb on - strand, within cbpA at 4240.097 kb on + strand, within cbpA at 4240.115 kb on + strand, within cbpA at 4240.133 kb on + strand, within cbpA at 4240.277 kb on + strand, within cbpA at 4240.287 kb on + strand, within cbpA at 4240.287 kb on + strand, within cbpA at 4240.481 kb on + strand, within cbpA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,237,362 + agp NOLOHH_21565 0.44 -0.4 4,237,363 - agp NOLOHH_21565 0.44 -0.4 4,237,414 + agp NOLOHH_21565 0.48 +1.0 4,237,415 - agp NOLOHH_21565 0.48 -1.0 4,237,415 - agp NOLOHH_21565 0.48 +1.2 4,237,415 - agp NOLOHH_21565 0.48 -0.6 4,237,490 - agp NOLOHH_21565 0.54 +0.4 4,237,517 - agp NOLOHH_21565 0.56 +0.2 4,237,517 - agp NOLOHH_21565 0.56 +0.4 4,237,658 + agp NOLOHH_21565 0.68 +2.4 4,237,735 + agp NOLOHH_21565 0.74 -0.6 4,237,735 + agp NOLOHH_21565 0.74 +0.4 4,237,805 - agp NOLOHH_21565 0.80 +1.4 4,237,805 - agp NOLOHH_21565 0.80 +1.1 4,237,805 - agp NOLOHH_21565 0.80 -0.0 4,237,805 - agp NOLOHH_21565 0.80 +0.0 4,237,817 - agp NOLOHH_21565 0.81 +1.0 4,237,890 - agp NOLOHH_21565 0.86 +1.0 4,237,932 + agp NOLOHH_21565 0.90 -1.4 4,237,933 - -0.2 4,238,161 - +0.4 4,238,165 - -0.2 4,238,165 - -0.3 4,238,165 - +0.1 4,238,165 - +1.0 4,238,165 - -1.1 4,238,199 + +1.0 4,238,200 - +1.0 4,238,369 - +0.4 4,239,672 + -1.2 4,239,765 + +1.0 4,239,765 + -0.5 4,239,765 + -0.3 4,239,765 + -0.2 4,239,765 + +0.1 4,239,808 + +0.1 4,239,810 + +0.1 4,239,961 - cbpA NOLOHH_21575 0.10 +0.4 4,239,961 - cbpA NOLOHH_21575 0.10 +1.6 4,240,097 + cbpA NOLOHH_21575 0.25 +1.7 4,240,115 + cbpA NOLOHH_21575 0.27 +0.8 4,240,133 + cbpA NOLOHH_21575 0.29 -0.9 4,240,277 + cbpA NOLOHH_21575 0.45 +0.1 4,240,287 + cbpA NOLOHH_21575 0.46 -0.6 4,240,287 + cbpA NOLOHH_21575 0.46 -1.2 4,240,481 + cbpA NOLOHH_21575 0.67 -0.0
Or see this region's nucleotide sequence