Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides
NOLOHH_21275: solA - N-methyl-L-tryptophan oxidase, at 4,183,467 to 4,184,585
solA
NOLOHH_21280: yceO - Uncharacterized protein YceO, at 4,184,633 to 4,184,746
yceO
NOLOHH_21285: yceJ - Cytochrome b561-like protein, at 4,185,007 to 4,185,573
yceJ
NOLOHH_21290: yceI - YceI family protein, at 4,185,577 to 4,186,152
yceI
Position (kb) 4184
4185 Strain fitness (log2 ratio) -1
0
1
2 at 4183.852 kb on + strand, within solA at 4183.853 kb on - strand, within solA at 4183.869 kb on + strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.870 kb on - strand, within solA at 4183.879 kb on + strand, within solA at 4183.922 kb on + strand, within solA at 4184.011 kb on + strand, within solA at 4184.015 kb on + strand, within solA at 4184.113 kb on + strand, within solA at 4184.117 kb on + strand, within solA at 4184.208 kb on + strand, within solA at 4184.255 kb on + strand, within solA at 4184.350 kb on + strand, within solA at 4184.350 kb on + strand, within solA at 4184.394 kb on + strand, within solA at 4184.512 kb on + strand at 4184.663 kb on - strand, within yceO at 4185.006 kb on + strand at 4185.042 kb on + strand at 4185.075 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.298 kb on + strand, within yceJ at 4185.302 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.464 kb on + strand, within yceJ at 4185.467 kb on + strand, within yceJ at 4185.711 kb on + strand, within yceI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,183,852 + solA NOLOHH_21275 0.34 +1.9 4,183,853 - solA NOLOHH_21275 0.34 +0.1 4,183,869 + solA NOLOHH_21275 0.36 +0.1 4,183,870 - solA NOLOHH_21275 0.36 +0.8 4,183,870 - solA NOLOHH_21275 0.36 +1.9 4,183,870 - solA NOLOHH_21275 0.36 +1.9 4,183,870 - solA NOLOHH_21275 0.36 +0.8 4,183,870 - solA NOLOHH_21275 0.36 +1.4 4,183,879 + solA NOLOHH_21275 0.37 +0.0 4,183,922 + solA NOLOHH_21275 0.41 +1.9 4,184,011 + solA NOLOHH_21275 0.49 +0.1 4,184,015 + solA NOLOHH_21275 0.49 +0.1 4,184,113 + solA NOLOHH_21275 0.58 +0.0 4,184,117 + solA NOLOHH_21275 0.58 -0.6 4,184,208 + solA NOLOHH_21275 0.66 +0.7 4,184,255 + solA NOLOHH_21275 0.70 +0.7 4,184,350 + solA NOLOHH_21275 0.79 -0.5 4,184,350 + solA NOLOHH_21275 0.79 -0.1 4,184,394 + solA NOLOHH_21275 0.83 -0.6 4,184,512 + +1.4 4,184,663 - yceO NOLOHH_21280 0.26 -0.2 4,185,006 + +0.4 4,185,042 + +0.1 4,185,075 + yceJ NOLOHH_21285 0.12 +0.9 4,185,298 + yceJ NOLOHH_21285 0.51 +0.9 4,185,298 + yceJ NOLOHH_21285 0.51 -1.2 4,185,302 + yceJ NOLOHH_21285 0.52 +0.6 4,185,464 + yceJ NOLOHH_21285 0.81 -0.4 4,185,464 + yceJ NOLOHH_21285 0.81 +0.8 4,185,467 + yceJ NOLOHH_21285 0.81 +0.7 4,185,711 + yceI NOLOHH_21290 0.23 +0.1
Or see this region's nucleotide sequence