Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20985

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlolE and lolD are separated by 5 nucleotideslolD and lolC overlap by 8 nucleotideslolC and ycfT are separated by 261 nucleotides NOLOHH_20975: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 4,125,496 to 4,126,734 lolE NOLOHH_20980: lolD - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 4,126,740 to 4,127,441 lolD NOLOHH_20985: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 4,127,434 to 4,128,633 lolC NOLOHH_20990: ycfT - Inner membrane protein YcfT, at 4,128,895 to 4,129,968 ycfT Position (kb) 4127 4128 4129Strain fitness (log2 ratio) -2 -1 0 1 2at 4128.671 kb on - strandat 4128.672 kb on + strandat 4128.673 kb on - strandat 4128.673 kb on - strandat 4128.868 kb on + strandat 4128.869 kb on - strandat 4128.958 kb on + strandat 4129.068 kb on + strand, within ycfTat 4129.069 kb on - strand, within ycfTat 4129.069 kb on - strand, within ycfTat 4129.208 kb on + strand, within ycfTat 4129.247 kb on + strand, within ycfTat 4129.248 kb on - strand, within ycfTat 4129.336 kb on + strand, within ycfTat 4129.352 kb on - strand, within ycfTat 4129.352 kb on - strand, within ycfTat 4129.365 kb on + strand, within ycfTat 4129.483 kb on + strand, within ycfTat 4129.484 kb on - strand, within ycfTat 4129.605 kb on + strand, within ycfTat 4129.605 kb on + strand, within ycfTat 4129.606 kb on - strand, within ycfTat 4129.608 kb on + strand, within ycfT

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
4,128,671 - +0.4
4,128,672 + -1.6
4,128,673 - +1.6
4,128,673 - +1.4
4,128,868 + -0.0
4,128,869 - +0.4
4,128,958 + +2.0
4,129,068 + ycfT NOLOHH_20990 0.16 +1.0
4,129,069 - ycfT NOLOHH_20990 0.16 +2.0
4,129,069 - ycfT NOLOHH_20990 0.16 +0.1
4,129,208 + ycfT NOLOHH_20990 0.29 -1.0
4,129,247 + ycfT NOLOHH_20990 0.33 -0.6
4,129,248 - ycfT NOLOHH_20990 0.33 -0.2
4,129,336 + ycfT NOLOHH_20990 0.41 +1.1
4,129,352 - ycfT NOLOHH_20990 0.43 +1.4
4,129,352 - ycfT NOLOHH_20990 0.43 -0.1
4,129,365 + ycfT NOLOHH_20990 0.44 -0.9
4,129,483 + ycfT NOLOHH_20990 0.55 +0.4
4,129,484 - ycfT NOLOHH_20990 0.55 -0.6
4,129,605 + ycfT NOLOHH_20990 0.66 +0.4
4,129,605 + ycfT NOLOHH_20990 0.66 +0.4
4,129,606 - ycfT NOLOHH_20990 0.66 -2.2
4,129,608 + ycfT NOLOHH_20990 0.66 +1.0

Or see this region's nucleotide sequence