Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_20955 and ycfZ overlap by 4 nucleotides ycfZ and cobB are separated by 138 nucleotides cobB and nagK are separated by 15 nucleotides nagK and lolE are separated by 28 nucleotides
NOLOHH_20955: NOLOHH_20955 - DUF3592 domain-containing protein, at 4,122,334 to 4,122,795
_20955
NOLOHH_20960: ycfZ - Inner membrane protein YcfZ, at 4,122,792 to 4,123,580
ycfZ
NOLOHH_20965: cobB - NAD-dependent protein deacylase, at 4,123,719 to 4,124,540
cobB
NOLOHH_20970: nagK - N-acetylglucosamine kinase, at 4,124,556 to 4,125,467
nagK
NOLOHH_20975: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 4,125,496 to 4,126,734
lolE
Position (kb) 4123
4124
4125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4123.938 kb on - strand, within cobB at 4124.025 kb on - strand, within cobB at 4124.106 kb on - strand, within cobB at 4124.149 kb on - strand, within cobB at 4124.151 kb on - strand, within cobB at 4124.199 kb on - strand, within cobB at 4124.373 kb on - strand, within cobB at 4124.647 kb on - strand at 4124.647 kb on - strand at 4125.249 kb on - strand, within nagK at 4125.349 kb on - strand, within nagK at 4125.362 kb on - strand, within nagK at 4125.464 kb on - strand at 4125.464 kb on - strand at 4125.484 kb on - strand at 4125.484 kb on - strand at 4125.489 kb on - strand at 4125.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,123,938 - cobB NOLOHH_20965 0.27 +0.4 4,124,025 - cobB NOLOHH_20965 0.37 +0.4 4,124,106 - cobB NOLOHH_20965 0.47 +0.4 4,124,149 - cobB NOLOHH_20965 0.52 +1.0 4,124,151 - cobB NOLOHH_20965 0.53 -0.6 4,124,199 - cobB NOLOHH_20965 0.58 +0.1 4,124,373 - cobB NOLOHH_20965 0.80 +0.9 4,124,647 - -3.2 4,124,647 - +0.4 4,125,249 - nagK NOLOHH_20970 0.76 +0.4 4,125,349 - nagK NOLOHH_20970 0.87 +0.6 4,125,362 - nagK NOLOHH_20970 0.88 +0.4 4,125,464 - -1.2 4,125,464 - +1.2 4,125,484 - +0.8 4,125,484 - -0.6 4,125,489 - +0.4 4,125,489 - +0.8
Or see this region's nucleotide sequence