Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20360

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntompW and yciC are separated by 356 nucleotidesyciC and yciB are separated by 29 nucleotidesyciB and yciA are separated by 104 nucleotides NOLOHH_20355: ompW - outer membrane protein OmpW, at 4,007,146 to 4,007,784 ompW NOLOHH_20360: yciC - envelope biogenesis factor ElyC, at 4,008,141 to 4,008,884 yciC NOLOHH_20365: yciB - septation protein A, at 4,008,914 to 4,009,453 yciB NOLOHH_20370: yciA - acyl-CoA thioester hydrolase YciA, at 4,009,558 to 4,009,956 yciA Position (kb) 4008 4009Strain fitness (log2 ratio) -2 -1 0 1 2at 4007.406 kb on - strand, within ompWat 4007.406 kb on - strand, within ompWat 4007.586 kb on + strand, within ompWat 4007.587 kb on - strand, within ompWat 4007.589 kb on - strand, within ompWat 4007.678 kb on - strand, within ompWat 4007.852 kb on - strandat 4007.973 kb on - strandat 4008.025 kb on + strandat 4008.026 kb on - strandat 4008.045 kb on - strandat 4008.864 kb on + strandat 4008.866 kb on + strandat 4009.517 kb on + strandat 4009.572 kb on + strandat 4009.572 kb on + strandat 4009.602 kb on + strand, within yciAat 4009.602 kb on + strand, within yciAat 4009.686 kb on + strand, within yciAat 4009.879 kb on + strand, within yciA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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4,007,406 - ompW NOLOHH_20355 0.41 -1.4
4,007,406 - ompW NOLOHH_20355 0.41 -0.0
4,007,586 + ompW NOLOHH_20355 0.69 +0.4
4,007,587 - ompW NOLOHH_20355 0.69 -0.2
4,007,589 - ompW NOLOHH_20355 0.69 +2.0
4,007,678 - ompW NOLOHH_20355 0.83 -0.6
4,007,852 - +0.8
4,007,973 - +0.4
4,008,025 + -0.2
4,008,026 - +0.4
4,008,045 - +0.4
4,008,864 + +1.1
4,008,866 + -0.3
4,009,517 + +1.4
4,009,572 + +0.2
4,009,572 + +0.8
4,009,602 + yciA NOLOHH_20370 0.11 +0.8
4,009,602 + yciA NOLOHH_20370 0.11 -1.9
4,009,686 + yciA NOLOHH_20370 0.32 -0.9
4,009,879 + yciA NOLOHH_20370 0.80 -0.0

Or see this region's nucleotide sequence