Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20350

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciG and yciF are separated by 85 nucleotidesyciF and yciE are separated by 45 nucleotidesyciE and ompW are separated by 59 nucleotides NOLOHH_20340: yciG - Uncharacterized protein YciG, at 4,005,769 to 4,005,948 yciG NOLOHH_20345: yciF - Protein YciF, at 4,006,034 to 4,006,534 yciF NOLOHH_20350: yciE - Protein YciE, at 4,006,580 to 4,007,086 yciE NOLOHH_20355: ompW - outer membrane protein OmpW, at 4,007,146 to 4,007,784 ompW Position (kb) 4006 4007 4008Strain fitness (log2 ratio) -1 0 1 2at 4005.622 kb on - strandat 4006.086 kb on + strand, within yciFat 4007.406 kb on - strand, within ompWat 4007.406 kb on - strand, within ompWat 4007.586 kb on + strand, within ompWat 4007.587 kb on - strand, within ompWat 4007.589 kb on - strand, within ompWat 4007.678 kb on - strand, within ompWat 4007.852 kb on - strandat 4007.973 kb on - strandat 4008.025 kb on + strandat 4008.026 kb on - strandat 4008.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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4,005,622 - -0.1
4,006,086 + yciF NOLOHH_20345 0.10 +0.4
4,007,406 - ompW NOLOHH_20355 0.41 -1.4
4,007,406 - ompW NOLOHH_20355 0.41 -0.0
4,007,586 + ompW NOLOHH_20355 0.69 +0.4
4,007,587 - ompW NOLOHH_20355 0.69 -0.2
4,007,589 - ompW NOLOHH_20355 0.69 +2.0
4,007,678 - ompW NOLOHH_20355 0.83 -0.6
4,007,852 - +0.8
4,007,973 - +0.4
4,008,025 + -0.2
4,008,026 - +0.4
4,008,045 - +0.4

Or see this region's nucleotide sequence