Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18630

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfI and ydfZ are separated by 35 nucleotidesydfZ and ydfH are separated by 177 nucleotidesydfH and ydfG are separated by 88 nucleotides NOLOHH_18625: ydfI - Uncharacterized oxidoreductase YdfI, at 3,647,417 to 3,648,877 ydfI NOLOHH_18630: ydfZ - Putative selenoprotein YdfZ, at 3,648,913 to 3,649,116 ydfZ NOLOHH_18635: ydfH - DNA-binding transcriptional regulator YdfH, at 3,649,294 to 3,649,980 ydfH NOLOHH_18640: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 3,650,069 to 3,650,815 ydfG Position (kb) 3648 3649 3650Strain fitness (log2 ratio) -1 0 1at 3648.055 kb on + strand, within ydfIat 3648.199 kb on + strand, within ydfIat 3648.477 kb on - strand, within ydfIat 3648.478 kb on + strand, within ydfIat 3648.629 kb on + strand, within ydfIat 3648.684 kb on + strand, within ydfIat 3648.705 kb on + strand, within ydfIat 3648.977 kb on - strand, within ydfZat 3649.810 kb on - strand, within ydfH

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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3,648,055 + ydfI NOLOHH_18625 0.44 -0.7
3,648,199 + ydfI NOLOHH_18625 0.54 -1.7
3,648,477 - ydfI NOLOHH_18625 0.73 +0.3
3,648,478 + ydfI NOLOHH_18625 0.73 +1.1
3,648,629 + ydfI NOLOHH_18625 0.83 -0.3
3,648,684 + ydfI NOLOHH_18625 0.87 +0.6
3,648,705 + ydfI NOLOHH_18625 0.88 -0.3
3,648,977 - ydfZ NOLOHH_18630 0.31 -0.3
3,649,810 - ydfH NOLOHH_18635 0.75 -1.5

Or see this region's nucleotide sequence