Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17655

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntselO and ydiE are separated by 3 nucleotidesydiE and aroH are separated by 131 nucleotidesaroH and ppsR are separated by 156 nucleotides NOLOHH_17645: selO - protein adenylyltransferase SelO, at 3,461,973 to 3,463,409 selO NOLOHH_17650: ydiE - Uncharacterized protein YdiE, at 3,463,413 to 3,463,604 ydiE NOLOHH_17655: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 3,463,736 to 3,464,782 aroH NOLOHH_17660: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 3,464,939 to 3,465,772 ppsR Position (kb) 3463 3464 3465Strain fitness (log2 ratio) -1 0 1 2at 3462.824 kb on + strand, within selOat 3463.460 kb on - strand, within ydiEat 3463.828 kb on - strandat 3463.889 kb on - strand, within aroHat 3464.093 kb on - strand, within aroHat 3464.093 kb on - strand, within aroHat 3464.125 kb on - strand, within aroHat 3464.164 kb on + strand, within aroHat 3464.291 kb on - strand, within aroHat 3464.448 kb on - strand, within aroHat 3465.397 kb on - strand, within ppsR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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3,462,824 + selO NOLOHH_17645 0.59 -0.1
3,463,460 - ydiE NOLOHH_17650 0.24 +1.3
3,463,828 - +0.7
3,463,889 - aroH NOLOHH_17655 0.15 -0.1
3,464,093 - aroH NOLOHH_17655 0.34 +2.6
3,464,093 - aroH NOLOHH_17655 0.34 +0.9
3,464,125 - aroH NOLOHH_17655 0.37 +1.6
3,464,164 + aroH NOLOHH_17655 0.41 +1.3
3,464,291 - aroH NOLOHH_17655 0.53 +1.3
3,464,448 - aroH NOLOHH_17655 0.68 -0.7
3,465,397 - ppsR NOLOHH_17660 0.55 +0.9

Or see this region's nucleotide sequence