Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16075

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_16070 and NOLOHH_16075 overlap by 4 nucleotidesNOLOHH_16075 and NOLOHH_16080 are separated by 419 nucleotides NOLOHH_16070: NOLOHH_16070 - ATP-binding protein, at 3,158,506 to 3,160,797 _16070 NOLOHH_16075: NOLOHH_16075 - HNH endonuclease, at 3,160,794 to 3,161,720 _16075 NOLOHH_16080: NOLOHH_16080 - hypothetical protein, at 3,162,140 to 3,165,868 _16080 Position (kb) 3160 3161 3162Strain fitness (log2 ratio) -1 0 1 2at 3159.830 kb on + strand, within NOLOHH_16070at 3159.856 kb on + strand, within NOLOHH_16070at 3159.858 kb on + strand, within NOLOHH_16070at 3159.877 kb on + strand, within NOLOHH_16070at 3159.879 kb on + strand, within NOLOHH_16070at 3159.879 kb on + strand, within NOLOHH_16070at 3159.879 kb on + strand, within NOLOHH_16070at 3159.879 kb on + strand, within NOLOHH_16070at 3159.879 kb on + strand, within NOLOHH_16070at 3159.882 kb on + strand, within NOLOHH_16070at 3159.882 kb on + strand, within NOLOHH_16070at 3159.920 kb on + strand, within NOLOHH_16070at 3159.957 kb on + strand, within NOLOHH_16070at 3160.060 kb on - strand, within NOLOHH_16070at 3160.223 kb on + strand, within NOLOHH_16070at 3160.223 kb on + strand, within NOLOHH_16070at 3160.224 kb on - strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.351 kb on + strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.352 kb on - strand, within NOLOHH_16070at 3160.380 kb on + strand, within NOLOHH_16070at 3160.380 kb on + strand, within NOLOHH_16070at 3160.381 kb on - strand, within NOLOHH_16070at 3160.700 kb on + strandat 3160.891 kb on - strand, within NOLOHH_16075at 3160.948 kb on + strand, within NOLOHH_16075at 3161.175 kb on - strand, within NOLOHH_16075at 3161.265 kb on - strand, within NOLOHH_16075at 3161.313 kb on - strand, within NOLOHH_16075at 3161.375 kb on + strand, within NOLOHH_16075at 3161.391 kb on - strand, within NOLOHH_16075at 3161.427 kb on - strand, within NOLOHH_16075at 3161.459 kb on - strand, within NOLOHH_16075at 3161.483 kb on - strand, within NOLOHH_16075at 3161.531 kb on + strand, within NOLOHH_16075at 3161.744 kb on - strandat 3161.744 kb on - strandat 3161.822 kb on - strandat 3161.844 kb on - strandat 3162.194 kb on - strandat 3162.518 kb on + strand, within NOLOHH_16080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
3,159,830 + NOLOHH_16070 0.58 +1.5
3,159,856 + NOLOHH_16070 0.59 -0.1
3,159,858 + NOLOHH_16070 0.59 +0.3
3,159,877 + NOLOHH_16070 0.60 +0.9
3,159,879 + NOLOHH_16070 0.60 +0.3
3,159,879 + NOLOHH_16070 0.60 +0.3
3,159,879 + NOLOHH_16070 0.60 +1.6
3,159,879 + NOLOHH_16070 0.60 -0.7
3,159,879 + NOLOHH_16070 0.60 -1.7
3,159,882 + NOLOHH_16070 0.60 +1.0
3,159,882 + NOLOHH_16070 0.60 +2.3
3,159,920 + NOLOHH_16070 0.62 +0.5
3,159,957 + NOLOHH_16070 0.63 -0.4
3,160,060 - NOLOHH_16070 0.68 -0.7
3,160,223 + NOLOHH_16070 0.75 -0.7
3,160,223 + NOLOHH_16070 0.75 +0.0
3,160,224 - NOLOHH_16070 0.75 -0.7
3,160,351 + NOLOHH_16070 0.80 +1.3
3,160,351 + NOLOHH_16070 0.80 +1.0
3,160,351 + NOLOHH_16070 0.80 +0.0
3,160,351 + NOLOHH_16070 0.80 +1.0
3,160,351 + NOLOHH_16070 0.80 +0.3
3,160,351 + NOLOHH_16070 0.80 +1.1
3,160,352 - NOLOHH_16070 0.81 -0.7
3,160,352 - NOLOHH_16070 0.81 +0.3
3,160,352 - NOLOHH_16070 0.81 -0.3
3,160,352 - NOLOHH_16070 0.81 +1.1
3,160,352 - NOLOHH_16070 0.81 -0.7
3,160,352 - NOLOHH_16070 0.81 -1.1
3,160,352 - NOLOHH_16070 0.81 +1.3
3,160,352 - NOLOHH_16070 0.81 -0.7
3,160,380 + NOLOHH_16070 0.82 +0.7
3,160,380 + NOLOHH_16070 0.82 +0.7
3,160,381 - NOLOHH_16070 0.82 +1.3
3,160,700 + +0.7
3,160,891 - NOLOHH_16075 0.10 -1.3
3,160,948 + NOLOHH_16075 0.17 +0.3
3,161,175 - NOLOHH_16075 0.41 -0.7
3,161,265 - NOLOHH_16075 0.51 +1.9
3,161,313 - NOLOHH_16075 0.56 +0.3
3,161,375 + NOLOHH_16075 0.63 -0.2
3,161,391 - NOLOHH_16075 0.64 +0.3
3,161,427 - NOLOHH_16075 0.68 +0.3
3,161,459 - NOLOHH_16075 0.72 -0.0
3,161,483 - NOLOHH_16075 0.74 +1.3
3,161,531 + NOLOHH_16075 0.80 -0.7
3,161,744 - +0.3
3,161,744 - +0.3
3,161,822 - -1.5
3,161,844 - +1.3
3,162,194 - -0.7
3,162,518 + NOLOHH_16080 0.10 +0.3

Or see this region's nucleotide sequence