Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15490

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegS and yegR are separated by 354 nucleotidesyegR and yegQ are separated by 329 nucleotides NOLOHH_15485: yegS - lipid kinase YegS, at 3,044,721 to 3,045,620 yegS NOLOHH_15490: yegR - Uncharacterized protein YegR, at 3,045,975 to 3,046,352 yegR NOLOHH_15500: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 3,046,682 to 3,048,043 yegQ Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3045.250 kb on - strand, within yegSat 3045.471 kb on + strand, within yegSat 3045.472 kb on - strand, within yegSat 3045.475 kb on + strand, within yegSat 3045.475 kb on + strand, within yegSat 3045.545 kb on + strandat 3045.654 kb on - strandat 3046.282 kb on + strand, within yegRat 3046.448 kb on - strandat 3046.448 kb on - strandat 3046.448 kb on - strandat 3046.538 kb on - strandat 3046.631 kb on - strandat 3046.781 kb on - strandat 3046.781 kb on - strandat 3046.781 kb on - strandat 3046.783 kb on - strandat 3046.808 kb on - strandat 3046.996 kb on - strand, within yegQat 3046.996 kb on - strand, within yegQat 3047.154 kb on + strand, within yegQat 3047.157 kb on + strand, within yegQat 3047.220 kb on - strand, within yegQat 3047.260 kb on - strand, within yegQat 3047.260 kb on - strand, within yegQat 3047.260 kb on - strand, within yegQat 3047.260 kb on - strand, within yegQat 3047.260 kb on - strand, within yegQat 3047.292 kb on + strand, within yegQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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3,045,250 - yegS NOLOHH_15485 0.59 +1.9
3,045,471 + yegS NOLOHH_15485 0.83 -2.0
3,045,472 - yegS NOLOHH_15485 0.83 +1.3
3,045,475 + yegS NOLOHH_15485 0.84 +0.6
3,045,475 + yegS NOLOHH_15485 0.84 +0.3
3,045,545 + -0.4
3,045,654 - -1.7
3,046,282 + yegR NOLOHH_15490 0.81 +0.9
3,046,448 - +0.9
3,046,448 - +2.9
3,046,448 - -1.4
3,046,538 - +0.1
3,046,631 - -1.0
3,046,781 - -0.2
3,046,781 - -0.2
3,046,781 - -0.4
3,046,783 - +0.1
3,046,808 - -0.7
3,046,996 - yegQ NOLOHH_15500 0.23 +0.1
3,046,996 - yegQ NOLOHH_15500 0.23 -0.1
3,047,154 + yegQ NOLOHH_15500 0.35 -0.7
3,047,157 + yegQ NOLOHH_15500 0.35 +0.1
3,047,220 - yegQ NOLOHH_15500 0.40 +1.3
3,047,260 - yegQ NOLOHH_15500 0.42 +1.3
3,047,260 - yegQ NOLOHH_15500 0.42 -0.7
3,047,260 - yegQ NOLOHH_15500 0.42 -1.2
3,047,260 - yegQ NOLOHH_15500 0.42 +0.3
3,047,260 - yegQ NOLOHH_15500 0.42 -0.7
3,047,292 + yegQ NOLOHH_15500 0.45 -1.7

Or see this region's nucleotide sequence