Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15485

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgatD and glpR are separated by 99 nucleotidesglpR and yegS are separated by 81 nucleotidesyegS and yegR are separated by 354 nucleotides NOLOHH_15475: gatD - galactitol-1-phosphate 5-dehydrogenase, at 3,042,720 to 3,043,760 gatD NOLOHH_15480: glpR - transcriptional regulator, at 3,043,860 to 3,044,639 glpR NOLOHH_15485: yegS - lipid kinase YegS, at 3,044,721 to 3,045,620 yegS NOLOHH_15490: yegR - Uncharacterized protein YegR, at 3,045,975 to 3,046,352 yegR Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3043.725 kb on - strandat 3043.730 kb on + strandat 3043.730 kb on + strandat 3043.730 kb on + strandat 3043.838 kb on - strandat 3043.857 kb on + strandat 3044.637 kb on + strandat 3044.972 kb on + strand, within yegSat 3045.250 kb on - strand, within yegSat 3045.471 kb on + strand, within yegSat 3045.472 kb on - strand, within yegSat 3045.475 kb on + strand, within yegSat 3045.475 kb on + strand, within yegSat 3045.545 kb on + strandat 3045.654 kb on - strandat 3046.282 kb on + strand, within yegRat 3046.448 kb on - strandat 3046.448 kb on - strandat 3046.448 kb on - strandat 3046.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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3,043,725 - +0.3
3,043,730 + -1.7
3,043,730 + +0.3
3,043,730 + +0.0
3,043,838 - +0.3
3,043,857 + +0.1
3,044,637 + -0.5
3,044,972 + yegS NOLOHH_15485 0.28 -1.7
3,045,250 - yegS NOLOHH_15485 0.59 +1.9
3,045,471 + yegS NOLOHH_15485 0.83 -2.0
3,045,472 - yegS NOLOHH_15485 0.83 +1.3
3,045,475 + yegS NOLOHH_15485 0.84 +0.6
3,045,475 + yegS NOLOHH_15485 0.84 +0.3
3,045,545 + -0.4
3,045,654 - -1.7
3,046,282 + yegR NOLOHH_15490 0.81 +0.9
3,046,448 - +0.9
3,046,448 - +2.9
3,046,448 - -1.4
3,046,538 - +0.1

Or see this region's nucleotide sequence