Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_15355 and NOLOHH_15360 are separated by 119 nucleotides NOLOHH_15360 and NOLOHH_15365 are separated by 24 nucleotides
NOLOHH_15355: NOLOHH_15355 - Site-specific recombinase, phage integrase family, at 3,019,752 to 3,021,110
_15355
NOLOHH_15360: NOLOHH_15360 - hypothetical protein, at 3,021,230 to 3,021,499
_15360
NOLOHH_15365: NOLOHH_15365 - hypothetical protein, at 3,021,524 to 3,022,465
_15365
Position (kb)
3021
3022 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3020.277 kb on - strand, within NOLOHH_15355 at 3020.459 kb on + strand, within NOLOHH_15355 at 3020.465 kb on + strand, within NOLOHH_15355 at 3020.529 kb on + strand, within NOLOHH_15355 at 3020.694 kb on + strand, within NOLOHH_15355 at 3020.694 kb on + strand, within NOLOHH_15355 at 3020.694 kb on + strand, within NOLOHH_15355 at 3020.749 kb on + strand, within NOLOHH_15355 at 3021.053 kb on + strand at 3021.053 kb on + strand at 3021.053 kb on + strand at 3021.054 kb on - strand at 3021.054 kb on - strand at 3021.193 kb on + strand at 3021.223 kb on + strand at 3021.300 kb on + strand, within NOLOHH_15360 at 3021.300 kb on + strand, within NOLOHH_15360 at 3021.300 kb on + strand, within NOLOHH_15360 at 3021.300 kb on + strand, within NOLOHH_15360 at 3021.300 kb on + strand, within NOLOHH_15360 at 3021.304 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.310 kb on + strand, within NOLOHH_15360 at 3021.424 kb on + strand, within NOLOHH_15360 at 3021.424 kb on + strand, within NOLOHH_15360 at 3021.424 kb on + strand, within NOLOHH_15360 at 3021.424 kb on + strand, within NOLOHH_15360 at 3021.424 kb on + strand, within NOLOHH_15360 at 3021.490 kb on + strand at 3021.591 kb on + strand at 3021.647 kb on + strand, within NOLOHH_15365 at 3021.668 kb on + strand, within NOLOHH_15365 at 3021.709 kb on + strand, within NOLOHH_15365 at 3021.767 kb on + strand, within NOLOHH_15365 at 3021.768 kb on - strand, within NOLOHH_15365 at 3021.792 kb on + strand, within NOLOHH_15365 at 3021.792 kb on + strand, within NOLOHH_15365 at 3021.792 kb on + strand, within NOLOHH_15365 at 3021.853 kb on + strand, within NOLOHH_15365 at 3022.008 kb on + strand, within NOLOHH_15365 at 3022.015 kb on + strand, within NOLOHH_15365 at 3022.015 kb on + strand, within NOLOHH_15365 at 3022.098 kb on + strand, within NOLOHH_15365 at 3022.098 kb on + strand, within NOLOHH_15365 at 3022.098 kb on + strand, within NOLOHH_15365 at 3022.098 kb on + strand, within NOLOHH_15365 at 3022.099 kb on - strand, within NOLOHH_15365 at 3022.099 kb on - strand, within NOLOHH_15365 at 3022.100 kb on + strand, within NOLOHH_15365 at 3022.101 kb on - strand, within NOLOHH_15365 at 3022.192 kb on + strand, within NOLOHH_15365
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 3,020,277 - NOLOHH_15355 0.39 +0.4 3,020,459 + NOLOHH_15355 0.52 +0.4 3,020,465 + NOLOHH_15355 0.52 -0.5 3,020,529 + NOLOHH_15355 0.57 +2.1 3,020,694 + NOLOHH_15355 0.69 -0.6 3,020,694 + NOLOHH_15355 0.69 -0.1 3,020,694 + NOLOHH_15355 0.69 +1.4 3,020,749 + NOLOHH_15355 0.73 +0.9 3,021,053 + -0.4 3,021,053 + -1.2 3,021,053 + +1.7 3,021,054 - +0.4 3,021,054 - -0.6 3,021,193 + +0.4 3,021,223 + +0.4 3,021,300 + NOLOHH_15360 0.26 +2.4 3,021,300 + NOLOHH_15360 0.26 -0.8 3,021,300 + NOLOHH_15360 0.26 +0.8 3,021,300 + NOLOHH_15360 0.26 -0.1 3,021,300 + NOLOHH_15360 0.26 -0.7 3,021,304 + NOLOHH_15360 0.27 -0.6 3,021,310 + NOLOHH_15360 0.30 -1.6 3,021,310 + NOLOHH_15360 0.30 +0.9 3,021,310 + NOLOHH_15360 0.30 -1.6 3,021,310 + NOLOHH_15360 0.30 +0.4 3,021,310 + NOLOHH_15360 0.30 -2.0 3,021,310 + NOLOHH_15360 0.30 +0.6 3,021,310 + NOLOHH_15360 0.30 -0.9 3,021,424 + NOLOHH_15360 0.72 -0.1 3,021,424 + NOLOHH_15360 0.72 -0.1 3,021,424 + NOLOHH_15360 0.72 -0.2 3,021,424 + NOLOHH_15360 0.72 -0.5 3,021,424 + NOLOHH_15360 0.72 -0.6 3,021,490 + -0.1 3,021,591 + +0.5 3,021,647 + NOLOHH_15365 0.13 +0.0 3,021,668 + NOLOHH_15365 0.15 +0.8 3,021,709 + NOLOHH_15365 0.20 +1.3 3,021,767 + NOLOHH_15365 0.26 -1.4 3,021,768 - NOLOHH_15365 0.26 -0.1 3,021,792 + NOLOHH_15365 0.28 -0.5 3,021,792 + NOLOHH_15365 0.28 +2.7 3,021,792 + NOLOHH_15365 0.28 -2.0 3,021,853 + NOLOHH_15365 0.35 -1.1 3,022,008 + NOLOHH_15365 0.51 +0.8 3,022,015 + NOLOHH_15365 0.52 -1.8 3,022,015 + NOLOHH_15365 0.52 +1.3 3,022,098 + NOLOHH_15365 0.61 +0.1 3,022,098 + NOLOHH_15365 0.61 -1.7 3,022,098 + NOLOHH_15365 0.61 -0.1 3,022,098 + NOLOHH_15365 0.61 +2.2 3,022,099 - NOLOHH_15365 0.61 -2.2 3,022,099 - NOLOHH_15365 0.61 -2.2 3,022,100 + NOLOHH_15365 0.61 -1.1 3,022,101 - NOLOHH_15365 0.61 +0.3 3,022,192 + NOLOHH_15365 0.71 -0.7
Or see this region's nucleotide sequence