Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14835

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnapA and napG are separated by 6 nucleotidesnapG and napH overlap by 14 nucleotidesnapH and napB overlap by 4 nucleotides NOLOHH_14830: napA - nitrate reductase catalytic subunit NapA, at 2,902,837 to 2,905,323 napA NOLOHH_14835: napG - ferredoxin-type protein NapG, at 2,905,330 to 2,906,025 napG NOLOHH_14840: napH - quinol dehydrogenase ferredoxin subunit NapH, at 2,906,012 to 2,906,875 napH NOLOHH_14845: napB - nitrate reductase cytochrome c-type subunit, at 2,906,872 to 2,907,321 napB Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -2 -1 0 1 2at 2904.522 kb on - strand, within napAat 2904.558 kb on - strand, within napAat 2904.610 kb on + strand, within napAat 2904.623 kb on - strand, within napAat 2904.706 kb on + strand, within napAat 2904.706 kb on + strand, within napAat 2904.734 kb on - strand, within napAat 2904.784 kb on + strand, within napAat 2904.865 kb on + strand, within napAat 2904.888 kb on + strand, within napAat 2904.888 kb on + strand, within napAat 2904.895 kb on + strand, within napAat 2904.895 kb on + strand, within napAat 2904.971 kb on - strand, within napAat 2905.207 kb on + strandat 2905.207 kb on + strandat 2905.207 kb on + strandat 2905.207 kb on + strandat 2905.208 kb on - strandat 2905.208 kb on - strandat 2905.321 kb on + strandat 2905.321 kb on + strandat 2905.321 kb on + strandat 2905.321 kb on + strandat 2905.329 kb on + strandat 2905.329 kb on + strandat 2905.329 kb on + strandat 2905.329 kb on + strandat 2905.330 kb on - strandat 2905.430 kb on + strand, within napGat 2905.600 kb on + strand, within napGat 2905.600 kb on + strand, within napGat 2905.839 kb on + strand, within napGat 2905.900 kb on - strand, within napGat 2905.913 kb on + strand, within napGat 2905.914 kb on - strand, within napGat 2905.974 kb on - strandat 2905.974 kb on - strandat 2906.023 kb on + strandat 2906.092 kb on - strandat 2906.092 kb on - strandat 2906.171 kb on + strand, within napHat 2906.171 kb on + strand, within napHat 2906.171 kb on + strand, within napHat 2906.179 kb on + strand, within napHat 2906.284 kb on + strand, within napHat 2906.298 kb on - strand, within napHat 2906.464 kb on - strand, within napHat 2906.577 kb on + strand, within napHat 2906.630 kb on + strand, within napHat 2906.736 kb on + strand, within napHat 2906.736 kb on + strand, within napHat 2906.737 kb on - strand, within napHat 2906.832 kb on + strandat 2906.833 kb on - strandat 2906.836 kb on + strandat 2906.836 kb on + strandat 2906.837 kb on - strandat 2906.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,904,522 - napA NOLOHH_14830 0.68 +0.9
2,904,558 - napA NOLOHH_14830 0.69 -0.9
2,904,610 + napA NOLOHH_14830 0.71 -0.1
2,904,623 - napA NOLOHH_14830 0.72 +1.0
2,904,706 + napA NOLOHH_14830 0.75 -1.2
2,904,706 + napA NOLOHH_14830 0.75 +0.1
2,904,734 - napA NOLOHH_14830 0.76 +0.4
2,904,784 + napA NOLOHH_14830 0.78 +0.0
2,904,865 + napA NOLOHH_14830 0.82 -1.0
2,904,888 + napA NOLOHH_14830 0.82 -0.0
2,904,888 + napA NOLOHH_14830 0.82 +1.1
2,904,895 + napA NOLOHH_14830 0.83 -0.6
2,904,895 + napA NOLOHH_14830 0.83 -0.5
2,904,971 - napA NOLOHH_14830 0.86 +1.0
2,905,207 + -1.2
2,905,207 + +0.8
2,905,207 + -0.9
2,905,207 + -1.1
2,905,208 - -0.9
2,905,208 - -0.2
2,905,321 + +0.5
2,905,321 + +1.4
2,905,321 + +1.6
2,905,321 + -0.3
2,905,329 + +0.7
2,905,329 + +0.6
2,905,329 + +1.7
2,905,329 + +0.4
2,905,330 - +0.8
2,905,430 + napG NOLOHH_14835 0.14 +0.2
2,905,600 + napG NOLOHH_14835 0.39 -0.5
2,905,600 + napG NOLOHH_14835 0.39 +0.4
2,905,839 + napG NOLOHH_14835 0.73 +0.4
2,905,900 - napG NOLOHH_14835 0.82 +1.8
2,905,913 + napG NOLOHH_14835 0.84 +0.7
2,905,914 - napG NOLOHH_14835 0.84 +0.1
2,905,974 - +0.7
2,905,974 - -0.1
2,906,023 + -0.1
2,906,092 - +2.7
2,906,092 - +0.4
2,906,171 + napH NOLOHH_14840 0.18 -0.1
2,906,171 + napH NOLOHH_14840 0.18 -0.6
2,906,171 + napH NOLOHH_14840 0.18 -1.9
2,906,179 + napH NOLOHH_14840 0.19 +1.4
2,906,284 + napH NOLOHH_14840 0.31 +0.6
2,906,298 - napH NOLOHH_14840 0.33 +1.7
2,906,464 - napH NOLOHH_14840 0.52 +0.1
2,906,577 + napH NOLOHH_14840 0.65 -0.1
2,906,630 + napH NOLOHH_14840 0.72 -1.2
2,906,736 + napH NOLOHH_14840 0.84 +0.4
2,906,736 + napH NOLOHH_14840 0.84 +0.1
2,906,737 - napH NOLOHH_14840 0.84 -2.6
2,906,832 + +0.7
2,906,833 - +1.4
2,906,836 + -1.2
2,906,836 + +2.0
2,906,837 - +0.4
2,906,842 - -0.2

Or see this region's nucleotide sequence