Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14530

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_14530 and NOLOHH_14535 are separated by 103 nucleotides NOLOHH_14530: NOLOHH_14530 - ElaD/SseL family deubiquitinase, at 2,833,647 to 2,834,018 _14530 NOLOHH_14535: NOLOHH_14535 - ElaD/SseL family deubiquitinase, at 2,834,122 to 2,834,865 _14535 Position (kb) 2833 2834 2835Strain fitness (log2 ratio) -1 0 1at 2832.700 kb on - strandat 2832.726 kb on + strandat 2832.993 kb on + strandat 2833.059 kb on - strandat 2833.066 kb on - strandat 2833.406 kb on + strandat 2833.410 kb on + strandat 2834.289 kb on + strand, within NOLOHH_14535at 2834.506 kb on + strand, within NOLOHH_14535at 2834.843 kb on + strandat 2834.955 kb on + strandat 2834.956 kb on - strandat 2834.976 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,832,700 - +1.0
2,832,726 + +0.1
2,832,993 + +0.1
2,833,059 - +0.4
2,833,066 - +1.4
2,833,406 + +1.1
2,833,410 + +1.4
2,834,289 + NOLOHH_14535 0.22 -0.6
2,834,506 + NOLOHH_14535 0.52 -0.3
2,834,843 + +0.4
2,834,955 + +0.1
2,834,956 - +1.0
2,834,976 + -0.2
2,834,996 + +0.9
2,834,996 + -0.2
2,834,996 + -0.6

Or see this region's nucleotide sequence