Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt truA and NOLOHH_14310 are separated by 82 nucleotides NOLOHH_14310 and accD are separated by 155 nucleotides accD and folC are separated by 69 nucleotides
NOLOHH_14305: truA - tRNA pseudouridine(38-40) synthase TruA, at 2,786,356 to 2,787,168
truA
NOLOHH_14310: NOLOHH_14310 - Protein DedA, at 2,787,251 to 2,787,910
_14310
NOLOHH_14315: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,788,066 to 2,788,980
accD
NOLOHH_14320: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,789,050 to 2,790,318
folC
Position (kb)
2788
2789 Strain fitness (log2 ratio)
-1
0
1
2 at 2787.091 kb on + strand at 2787.092 kb on - strand at 2787.122 kb on - strand at 2787.175 kb on + strand at 2787.175 kb on + strand at 2787.176 kb on - strand at 2787.208 kb on + strand at 2787.208 kb on + strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.212 kb on + strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.233 kb on + strand at 2787.242 kb on + strand at 2787.242 kb on + strand at 2787.243 kb on - strand at 2787.251 kb on - strand at 2787.281 kb on - strand at 2787.323 kb on + strand, within NOLOHH_14310 at 2787.324 kb on - strand, within NOLOHH_14310 at 2787.338 kb on + strand, within NOLOHH_14310 at 2787.339 kb on - strand, within NOLOHH_14310 at 2787.466 kb on + strand, within NOLOHH_14310 at 2787.518 kb on + strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.587 kb on + strand, within NOLOHH_14310 at 2787.725 kb on + strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.768 kb on - strand, within NOLOHH_14310 at 2787.814 kb on + strand, within NOLOHH_14310 at 2787.847 kb on + strand at 2787.870 kb on + strand at 2787.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 2,787,091 + -1.2 2,787,092 - -0.2 2,787,122 - +1.4 2,787,175 + -0.9 2,787,175 + -0.4 2,787,176 - -0.0 2,787,208 + -0.9 2,787,208 + -1.6 2,787,209 - -0.0 2,787,209 - +0.8 2,787,209 - -0.9 2,787,212 + +2.2 2,787,213 - +0.8 2,787,213 - +2.4 2,787,213 - -0.2 2,787,233 + +1.4 2,787,242 + -0.6 2,787,242 + +1.4 2,787,243 - +0.4 2,787,251 - +1.0 2,787,281 - +0.4 2,787,323 + NOLOHH_14310 0.11 +0.4 2,787,324 - NOLOHH_14310 0.11 +0.5 2,787,338 + NOLOHH_14310 0.13 +1.0 2,787,339 - NOLOHH_14310 0.13 +1.1 2,787,466 + NOLOHH_14310 0.33 +1.1 2,787,518 + NOLOHH_14310 0.40 -0.3 2,787,519 - NOLOHH_14310 0.41 +1.2 2,787,519 - NOLOHH_14310 0.41 -1.6 2,787,519 - NOLOHH_14310 0.41 +0.4 2,787,587 + NOLOHH_14310 0.51 -1.6 2,787,725 + NOLOHH_14310 0.72 -0.3 2,787,726 - NOLOHH_14310 0.72 +1.0 2,787,726 - NOLOHH_14310 0.72 +0.1 2,787,768 - NOLOHH_14310 0.78 -1.2 2,787,814 + NOLOHH_14310 0.85 -1.3 2,787,847 + -1.0 2,787,870 + +0.8 2,787,871 - -1.2
Or see this region's nucleotide sequence