Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13185

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,552,107	+	hmpA	NOLOHH_13180	0.45	-1.6
2,552,112	+	hmpA	NOLOHH_13180	0.45	+2.4
2,552,199	+	hmpA	NOLOHH_13180	0.53	+1.0
2,552,308	+	hmpA	NOLOHH_13180	0.62	+1.2
2,552,346	+	hmpA	NOLOHH_13180	0.65	+0.1
2,552,368	+	hmpA	NOLOHH_13180	0.67	+0.4
2,552,372	+	hmpA	NOLOHH_13180	0.67	+1.1
2,552,373	-	hmpA	NOLOHH_13180	0.67	-0.6
2,552,373	-	hmpA	NOLOHH_13180	0.67	-0.0
2,552,373	-	hmpA	NOLOHH_13180	0.67	-1.9
2,552,373	-	hmpA	NOLOHH_13180	0.67	-0.6
2,552,384	+	hmpA	NOLOHH_13180	0.68	+0.7
2,552,384	+	hmpA	NOLOHH_13180	0.68	-0.0
2,552,385	-	hmpA	NOLOHH_13180	0.68	-0.3
2,552,391	+	hmpA	NOLOHH_13180	0.69	+0.4
2,552,478	+	hmpA	NOLOHH_13180	0.76	-0.6
2,552,478	+	hmpA	NOLOHH_13180	0.76	-0.6
2,552,478	+	hmpA	NOLOHH_13180	0.76	-0.6
2,552,479	-	hmpA	NOLOHH_13180	0.76	-1.1
2,552,479	-	hmpA	NOLOHH_13180	0.76	-1.2
2,552,581	+	hmpA	NOLOHH_13180	0.85	-1.3
2,552,615	-	hmpA	NOLOHH_13180	0.88	-1.4
2,552,624	-	hmpA	NOLOHH_13180	0.88	-0.6
2,552,624	-	hmpA	NOLOHH_13180	0.88	+0.4
2,552,668	+				-0.3
2,552,668	+				-0.2
2,552,668	+				-0.7
2,552,669	-				+0.8
2,552,669	-				+0.4
2,552,669	-				+0.7
2,552,732	+				-0.0
2,552,733	-				+1.1
2,552,761	+				-0.9
2,552,761	+				+0.2
2,552,762	-				-1.8
2,552,762	-				+0.4
2,552,762	-				+0.6
2,552,832	+				-0.0
2,552,833	-				+0.1
2,552,833	-				-1.3
2,553,013	-				-1.6
2,553,014	+				-0.6
2,553,014	+				+0.4
2,553,014	+				-0.3
2,553,015	-				-0.2
2,553,044	+				-0.7
2,553,047	-				-2.2
2,553,201	-				-0.6
2,553,251	+	glyA	NOLOHH_13185	0.13	-2.9
2,553,252	-	glyA	NOLOHH_13185	0.13	-0.0
2,553,252	-	glyA	NOLOHH_13185	0.13	+1.4
2,553,404	+	glyA	NOLOHH_13185	0.25	-0.6
2,553,404	+	glyA	NOLOHH_13185	0.25	+0.4
2,553,506	+	glyA	NOLOHH_13185	0.33	-0.2
2,553,506	+	glyA	NOLOHH_13185	0.33	-0.6
2,553,506	+	glyA	NOLOHH_13185	0.33	-0.2
2,553,551	+	glyA	NOLOHH_13185	0.37	+0.4
2,553,760	+	glyA	NOLOHH_13185	0.54	+0.4
2,553,761	-	glyA	NOLOHH_13185	0.54	+1.4
2,553,834	-	glyA	NOLOHH_13185	0.59	+0.4
2,554,108	+	glyA	NOLOHH_13185	0.81	-0.6
2,554,195	+	glyA	NOLOHH_13185	0.88	+0.7
2,554,300	+				-2.6
2,554,334	+				-0.2
2,554,419	-				+1.4
2,554,434	+				-0.3
2,554,435	-				+0.1
2,554,435	-				+0.4
2,554,435	-				+0.4
2,554,435	-				+0.2
2,554,441	-				-0.6
2,554,473	-				+0.4
2,554,473	-				-0.6
2,554,473	-				-0.0
2,554,555	+	yphH	NOLOHH_13190	0.12	+0.1
2,554,556	-	yphH	NOLOHH_13190	0.13	+0.8
2,554,556	-	yphH	NOLOHH_13190	0.13	+1.1
2,554,556	-	yphH	NOLOHH_13190	0.13	+0.2
2,554,558	+	yphH	NOLOHH_13190	0.13	+0.4
2,554,559	-	yphH	NOLOHH_13190	0.13	-0.2
2,554,559	-	yphH	NOLOHH_13190	0.13	+0.3
2,554,559	-	yphH	NOLOHH_13190	0.13	-0.6
2,554,559	-	yphH	NOLOHH_13190	0.13	-1.2
2,554,561	+	yphH	NOLOHH_13190	0.13	+1.7
2,554,562	-	yphH	NOLOHH_13190	0.13	-0.1
2,554,597	-	yphH	NOLOHH_13190	0.16	+0.4
2,554,597	-	yphH	NOLOHH_13190	0.16	+0.4
2,554,637	-	yphH	NOLOHH_13190	0.19	+1.4
2,554,638	+	yphH	NOLOHH_13190	0.19	-0.6
2,554,638	+	yphH	NOLOHH_13190	0.19	-0.2
2,554,638	+	yphH	NOLOHH_13190	0.19	+0.4
2,554,639	-	yphH	NOLOHH_13190	0.20	+0.4
2,554,719	-	yphH	NOLOHH_13190	0.26	+1.0
2,554,800	-	yphH	NOLOHH_13190	0.33	-0.9
2,554,902	+	yphH	NOLOHH_13190	0.42	-1.2
2,554,997	-	yphH	NOLOHH_13190	0.49	+0.2
2,555,079	+	yphH	NOLOHH_13190	0.56	-0.2
2,555,080	-	yphH	NOLOHH_13190	0.56	+0.4
2,555,080	-	yphH	NOLOHH_13190	0.56	+1.0
2,555,080	-	yphH	NOLOHH_13190	0.56	-0.0
2,555,080	-	yphH	NOLOHH_13190	0.56	-0.0
2,555,201	-	yphH	NOLOHH_13190	0.67	-1.5
2,555,201	-	yphH	NOLOHH_13190	0.67	+0.1