Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12985

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and pssL overlap by 17 nucleotidespssL and pat are separated by 88 nucleotides NOLOHH_12980: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 2,514,496 to 2,515,851 pssA NOLOHH_12985: pssL - Protein PssL, at 2,515,835 to 2,515,876 pssL NOLOHH_12990: pat - protein lysine acetyltransferase, at 2,515,965 to 2,518,625 pat Position (kb) 2515 2516Strain fitness (log2 ratio) -2 -1 0 1at 2515.908 kb on - strandat 2515.908 kb on - strandat 2515.908 kb on - strandat 2515.908 kb on - strandat 2515.993 kb on - strandat 2515.997 kb on + strandat 2516.037 kb on - strandat 2516.088 kb on - strandat 2516.088 kb on - strandat 2516.107 kb on - strandat 2516.107 kb on - strandat 2516.107 kb on - strandat 2516.107 kb on - strandat 2516.124 kb on - strandat 2516.125 kb on + strandat 2516.125 kb on + strandat 2516.129 kb on + strandat 2516.130 kb on - strandat 2516.157 kb on + strandat 2516.158 kb on - strandat 2516.158 kb on - strandat 2516.281 kb on - strand, within patat 2516.326 kb on - strand, within patat 2516.744 kb on - strand, within pat

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,515,908 - +1.6
2,515,908 - +0.4
2,515,908 - -0.6
2,515,908 - -1.6
2,515,993 - +0.9
2,515,997 + -0.6
2,516,037 - -0.5
2,516,088 - -1.9
2,516,088 - -0.6
2,516,107 - -0.4
2,516,107 - -0.0
2,516,107 - +0.6
2,516,107 - -0.6
2,516,124 - -0.3
2,516,125 + -1.2
2,516,125 + +1.7
2,516,129 + -0.8
2,516,130 - +0.4
2,516,157 + -0.6
2,516,158 - +0.1
2,516,158 - -0.5
2,516,281 - pat NOLOHH_12990 0.12 +1.2
2,516,326 - pat NOLOHH_12990 0.14 +0.4
2,516,744 - pat NOLOHH_12990 0.29 -0.6

Or see this region's nucleotide sequence