Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12425

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,412,415	+	hycA	NOLOHH_12415	0.51	-0.3
2,412,416	-	hycA	NOLOHH_12415	0.51	+0.1
2,412,418	+	hycA	NOLOHH_12415	0.51	+1.0
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.5
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.2
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.9
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.1
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.4
2,412,419	-	hycA	NOLOHH_12415	0.52	+1.0
2,412,535	+	hycA	NOLOHH_12415	0.77	-0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	+0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	+0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	-2.4
2,412,536	-	hycA	NOLOHH_12415	0.77	+0.4
2,412,560	-	hycA	NOLOHH_12415	0.82	-0.6
2,412,569	+	hycA	NOLOHH_12415	0.84	+0.2
2,412,570	-	hycA	NOLOHH_12415	0.84	+0.7
2,412,571	+	hycA	NOLOHH_12415	0.84	+0.6
2,412,571	+	hycA	NOLOHH_12415	0.84	+0.1
2,412,571	+	hycA	NOLOHH_12415	0.84	-0.7
2,412,605	+				+0.4
2,412,781	-				+0.0
2,412,781	-				+0.4
2,413,147	+	hycB	NOLOHH_12420	0.62	+0.7
2,413,204	+	hycB	NOLOHH_12420	0.71	-1.2
2,413,204	+	hycB	NOLOHH_12420	0.71	+0.5
2,413,204	+	hycB	NOLOHH_12420	0.71	-0.3
2,413,271	-	hycB	NOLOHH_12420	0.82	+0.1
2,413,300	+	hycB	NOLOHH_12420	0.87	-1.5
2,413,300	+	hycB	NOLOHH_12420	0.87	+0.8
2,413,301	-	hycB	NOLOHH_12420	0.87	+0.2
2,413,301	-	hycB	NOLOHH_12420	0.87	-0.2
2,413,373	-				+0.9
2,413,373	-				+1.2
2,413,463	+				-0.3
2,413,507	+				+0.3
2,413,508	-				-0.2
2,413,510	-				-0.2
2,413,579	+	hycC	NOLOHH_12425	0.11	+1.0
2,413,579	+	hycC	NOLOHH_12425	0.11	-0.1
2,413,580	-	hycC	NOLOHH_12425	0.11	-0.3
2,413,580	-	hycC	NOLOHH_12425	0.11	-1.0
2,413,580	-	hycC	NOLOHH_12425	0.11	-0.4
2,413,620	+	hycC	NOLOHH_12425	0.13	+0.9
2,413,654	+	hycC	NOLOHH_12425	0.15	-0.5
2,413,655	-	hycC	NOLOHH_12425	0.15	+0.5
2,413,711	-	hycC	NOLOHH_12425	0.18	+0.8
2,413,711	-	hycC	NOLOHH_12425	0.18	+0.4
2,414,007	+	hycC	NOLOHH_12425	0.35	-0.6
2,414,082	-	hycC	NOLOHH_12425	0.39	+1.4
2,414,204	-	hycC	NOLOHH_12425	0.45	-1.6
2,414,242	+	hycC	NOLOHH_12425	0.47	+1.4
2,414,268	+	hycC	NOLOHH_12425	0.49	+0.4
2,414,353	+	hycC	NOLOHH_12425	0.54	+1.0
2,414,353	+	hycC	NOLOHH_12425	0.54	+0.2
2,414,387	+	hycC	NOLOHH_12425	0.55	-0.6
2,414,388	-	hycC	NOLOHH_12425	0.55	+0.9
2,414,388	-	hycC	NOLOHH_12425	0.55	-1.5
2,414,455	-	hycC	NOLOHH_12425	0.59	-1.4
2,414,493	-	hycC	NOLOHH_12425	0.61	+0.4
2,414,553	+	hycC	NOLOHH_12425	0.64	-0.3
2,414,554	-	hycC	NOLOHH_12425	0.65	-0.6
2,414,554	-	hycC	NOLOHH_12425	0.65	+0.6
2,414,558	-	hycC	NOLOHH_12425	0.65	-1.2
2,414,664	+	hycC	NOLOHH_12425	0.71	-0.2
2,414,677	+	hycC	NOLOHH_12425	0.71	-0.9
2,414,753	+	hycC	NOLOHH_12425	0.75	+0.8
2,414,753	+	hycC	NOLOHH_12425	0.75	+0.2
2,414,754	-	hycC	NOLOHH_12425	0.75	-0.2
2,414,783	+	hycC	NOLOHH_12425	0.77	+0.3
2,414,783	+	hycC	NOLOHH_12425	0.77	-0.2
2,414,784	-	hycC	NOLOHH_12425	0.77	-0.6
2,414,784	-	hycC	NOLOHH_12425	0.77	-1.0
2,414,835	-	hycC	NOLOHH_12425	0.80	-0.2
2,414,835	-	hycC	NOLOHH_12425	0.80	-0.2
2,414,856	+	hycC	NOLOHH_12425	0.81	+0.1
2,414,857	-	hycC	NOLOHH_12425	0.81	+0.8
2,414,925	+	hycC	NOLOHH_12425	0.85	-0.1
2,414,926	-	hycC	NOLOHH_12425	0.85	-0.5
2,415,123	+				+0.9
2,415,124	-				+0.7
2,415,180	+				+0.4
2,415,180	+				+0.8
2,415,181	-				+0.7
2,415,214	+				+0.4
2,415,214	+				+0.4
2,415,214	+				-0.2
2,415,223	+				-0.4
2,415,241	+				-0.8
2,415,242	-				-0.2
2,415,299	+	hycD	NOLOHH_12430	0.10	-0.2
2,415,434	+	hycD	NOLOHH_12430	0.25	+0.9
2,415,502	+	hycD	NOLOHH_12430	0.32	+1.6
2,415,502	+	hycD	NOLOHH_12430	0.32	+0.8
2,415,502	+	hycD	NOLOHH_12430	0.32	+0.4
2,415,503	-	hycD	NOLOHH_12430	0.32	+0.2
2,415,503	-	hycD	NOLOHH_12430	0.32	+0.6
2,415,503	-	hycD	NOLOHH_12430	0.32	-1.0
2,415,503	-	hycD	NOLOHH_12430	0.32	+0.1
2,415,507	+	hycD	NOLOHH_12430	0.33	+1.2
2,415,507	+	hycD	NOLOHH_12430	0.33	-1.2
2,415,507	+	hycD	NOLOHH_12430	0.33	-0.5
2,415,508	-	hycD	NOLOHH_12430	0.33	+0.2
2,415,508	-	hycD	NOLOHH_12430	0.33	+0.4
2,415,508	-	hycD	NOLOHH_12430	0.33	+0.1
2,415,508	-	hycD	NOLOHH_12430	0.33	-1.2
2,415,539	+	hycD	NOLOHH_12430	0.36	-0.6
2,415,540	-	hycD	NOLOHH_12430	0.36	-0.6
2,415,696	+	hycD	NOLOHH_12430	0.53	-0.1
2,415,697	-	hycD	NOLOHH_12430	0.53	+0.2
2,415,837	+	hycD	NOLOHH_12430	0.69	-1.2
2,415,872	+	hycD	NOLOHH_12430	0.72	+0.8
2,415,920	+	hycD	NOLOHH_12430	0.77	-0.7
2,415,921	-	hycD	NOLOHH_12430	0.78	+1.4
2,416,055	+				+0.4
2,416,056	-				-0.8
2,416,058	+				-0.1
2,416,172	+				-0.3
2,416,172	+				+0.1
2,416,172	+				+0.0
2,416,172	+				+0.2
2,416,172	+				-0.1
2,416,173	-				+0.1
2,416,173	-				-0.6
2,416,173	-				+0.3