Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12405

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,409,785	+	hypD	NOLOHH_12395	0.38	-0.1
2,409,786	-	hypD	NOLOHH_12395	0.38	+0.7
2,409,786	-	hypD	NOLOHH_12395	0.38	-0.4
2,409,847	+	hypD	NOLOHH_12395	0.43	+0.2
2,409,850	-	hypD	NOLOHH_12395	0.44	-0.2
2,409,850	-	hypD	NOLOHH_12395	0.44	+0.0
2,409,871	+	hypD	NOLOHH_12395	0.46	+1.2
2,409,874	+	hypD	NOLOHH_12395	0.46	-2.1
2,409,874	+	hypD	NOLOHH_12395	0.46	-1.3
2,409,874	+	hypD	NOLOHH_12395	0.46	+0.0
2,409,875	-	hypD	NOLOHH_12395	0.46	+1.4
2,409,875	-	hypD	NOLOHH_12395	0.46	+0.2
2,409,952	+	hypD	NOLOHH_12395	0.53	+0.9
2,409,953	-	hypD	NOLOHH_12395	0.53	-1.9
2,409,953	-	hypD	NOLOHH_12395	0.53	+0.7
2,409,955	+	hypD	NOLOHH_12395	0.53	+0.6
2,409,955	+	hypD	NOLOHH_12395	0.53	+2.7
2,409,956	-	hypD	NOLOHH_12395	0.53	-0.5
2,409,956	-	hypD	NOLOHH_12395	0.53	+1.0
2,410,198	+	hypD	NOLOHH_12395	0.75	-0.6
2,410,249	+	hypD	NOLOHH_12395	0.79	+0.4
2,410,250	-	hypD	NOLOHH_12395	0.79	+0.6
2,410,263	-	hypD	NOLOHH_12395	0.81	-1.7
2,410,313	+	hypD	NOLOHH_12395	0.85	-0.3
2,410,340	-	hypD	NOLOHH_12395	0.87	+0.5
2,410,395	+				+1.0
2,410,395	+				+0.4
2,410,396	-				-0.5
2,410,496	+				+0.3
2,410,576	-	hypC	NOLOHH_12400	0.35	-1.9
2,410,576	-	hypC	NOLOHH_12400	0.35	+0.2
2,410,576	-	hypC	NOLOHH_12400	0.35	-1.2
2,410,576	-	hypC	NOLOHH_12400	0.35	-0.6
2,410,576	-	hypC	NOLOHH_12400	0.35	+0.5
2,410,579	+	hypC	NOLOHH_12400	0.36	-0.2
2,410,580	-	hypC	NOLOHH_12400	0.37	-0.8
2,410,604	-	hypC	NOLOHH_12400	0.45	-0.2
2,410,664	-	hypC	NOLOHH_12400	0.67	+0.5
2,410,664	-	hypC	NOLOHH_12400	0.67	-0.4
2,410,664	-	hypC	NOLOHH_12400	0.67	-0.7
2,410,745	-				+0.4
2,410,811	+				-1.6
2,410,934	+	hypB	NOLOHH_12405	0.22	-1.0
2,410,935	-	hypB	NOLOHH_12405	0.22	+0.3
2,411,025	+	hypB	NOLOHH_12405	0.32	-1.0
2,411,025	+	hypB	NOLOHH_12405	0.32	+0.8
2,411,351	+	hypB	NOLOHH_12405	0.70	+1.2
2,411,438	-	hypB	NOLOHH_12405	0.80	-1.3
2,411,487	-	hypB	NOLOHH_12405	0.85	+0.2
2,411,538	-				+0.1
2,411,558	+				+0.4
2,411,558	+				+0.4
2,411,578	+				+0.4
2,411,578	+				-0.7
2,411,579	-				-0.1
2,411,579	-				+1.2
2,411,609	+				-0.3
2,411,609	+				+1.4
2,411,609	+				-1.0
2,411,609	+				+0.4
2,411,610	-				+0.6
2,411,610	-				-1.2
2,411,610	-				-0.6
2,411,631	+				+0.4
2,411,631	+				+1.2
2,411,631	+				-0.6
2,411,632	-				-0.7
2,411,632	-				-0.9
2,411,632	-				-0.3
2,411,676	+	hypA	NOLOHH_12410	0.16	+0.6
2,411,677	-	hypA	NOLOHH_12410	0.17	-0.3
2,411,734	+	hypA	NOLOHH_12410	0.33	-0.4
2,411,734	+	hypA	NOLOHH_12410	0.33	-0.4
2,411,734	+	hypA	NOLOHH_12410	0.33	+2.0
2,411,735	-	hypA	NOLOHH_12410	0.33	+0.4
2,411,735	-	hypA	NOLOHH_12410	0.33	+0.8
2,411,735	-	hypA	NOLOHH_12410	0.33	-1.2
2,411,790	-	hypA	NOLOHH_12410	0.49	+0.4
2,411,958	+				-1.2
2,411,959	-				+1.7
2,411,959	-				-0.3
2,411,969	+				-0.4
2,411,986	+				+0.8
2,411,986	+				-0.2
2,411,986	+				-1.9
2,411,987	-				+0.4
2,411,987	-				+0.3
2,411,987	-				+0.1
2,412,040	-				+1.7
2,412,186	+				-0.5
2,412,197	+				+0.2
2,412,197	+				+0.7
2,412,198	-				-0.3
2,412,214	+				+0.9
2,412,215	-				-1.0
2,412,259	+	hycA	NOLOHH_12415	0.17	-1.2
2,412,259	+	hycA	NOLOHH_12415	0.17	-0.8
2,412,259	+	hycA	NOLOHH_12415	0.17	+0.1
2,412,259	+	hycA	NOLOHH_12415	0.17	+1.2
2,412,260	-	hycA	NOLOHH_12415	0.17	-0.2
2,412,260	-	hycA	NOLOHH_12415	0.17	-0.3
2,412,373	+	hycA	NOLOHH_12415	0.42	+1.4
2,412,373	+	hycA	NOLOHH_12415	0.42	-0.3
2,412,373	+	hycA	NOLOHH_12415	0.42	+1.1
2,412,374	-	hycA	NOLOHH_12415	0.42	-0.1
2,412,374	-	hycA	NOLOHH_12415	0.42	-0.5
2,412,374	-	hycA	NOLOHH_12415	0.42	+0.4
2,412,415	+	hycA	NOLOHH_12415	0.51	-0.3
2,412,416	-	hycA	NOLOHH_12415	0.51	+0.1
2,412,418	+	hycA	NOLOHH_12415	0.51	+1.0
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.5
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	+0.4
2,412,418	+	hycA	NOLOHH_12415	0.51	-0.2
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.9
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.1
2,412,419	-	hycA	NOLOHH_12415	0.52	-0.4
2,412,419	-	hycA	NOLOHH_12415	0.52	+1.0
2,412,535	+	hycA	NOLOHH_12415	0.77	-0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	+0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	+0.4
2,412,535	+	hycA	NOLOHH_12415	0.77	-2.4
2,412,536	-	hycA	NOLOHH_12415	0.77	+0.4
2,412,560	-	hycA	NOLOHH_12415	0.82	-0.6
2,412,569	+	hycA	NOLOHH_12415	0.84	+0.2
2,412,570	-	hycA	NOLOHH_12415	0.84	+0.7
2,412,571	+	hycA	NOLOHH_12415	0.84	+0.6
2,412,571	+	hycA	NOLOHH_12415	0.84	+0.1
2,412,571	+	hycA	NOLOHH_12415	0.84	-0.7
2,412,605	+				+0.4