Strain Fitness in Escherichia coli ECOR27 around NOLOHH_10460

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaG and rpsU are separated by 110 nucleotidesrpsU and tsaD are separated by 237 nucleotidestsaD and ttdT are separated by 42 nucleotides NOLOHH_10450: dnaG - DNA primase, at 2,019,964 to 2,021,709 dnaG NOLOHH_10455: rpsU - 30S ribosomal protein S21, at 2,021,820 to 2,022,035 rpsU NOLOHH_10460: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 2,022,273 to 2,023,286 tsaD NOLOHH_10465: ttdT - L-tartrate/succinate antiporter, at 2,023,329 to 2,024,792 ttdT Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -2 -1 0 1 2at 2021.822 kb on - strandat 2022.165 kb on + strandat 2022.165 kb on + strandat 2022.180 kb on + strandat 2022.181 kb on - strandat 2022.181 kb on - strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.216 kb on + strandat 2022.216 kb on + strandat 2022.216 kb on + strandat 2022.237 kb on + strandat 2022.252 kb on + strandat 2022.252 kb on + strandat 2023.284 kb on + strandat 2023.290 kb on + strandat 2023.330 kb on + strandat 2023.330 kb on + strandat 2023.330 kb on + strandat 2023.331 kb on - strandat 2023.386 kb on + strandat 2023.387 kb on - strandat 2023.417 kb on + strandat 2023.418 kb on - strandat 2023.418 kb on - strandat 2023.443 kb on - strandat 2023.450 kb on + strandat 2023.451 kb on - strandat 2023.475 kb on - strandat 2023.475 kb on - strandat 2023.481 kb on + strand, within ttdTat 2023.482 kb on - strand, within ttdTat 2023.482 kb on - strand, within ttdTat 2023.592 kb on + strand, within ttdTat 2023.592 kb on + strand, within ttdTat 2023.592 kb on + strand, within ttdTat 2023.592 kb on + strand, within ttdTat 2023.593 kb on - strand, within ttdTat 2023.593 kb on - strand, within ttdTat 2023.593 kb on - strand, within ttdTat 2023.593 kb on - strand, within ttdTat 2023.594 kb on + strand, within ttdTat 2023.594 kb on + strand, within ttdTat 2023.595 kb on - strand, within ttdTat 2023.595 kb on - strand, within ttdTat 2023.595 kb on - strand, within ttdTat 2023.595 kb on - strand, within ttdTat 2023.595 kb on - strand, within ttdTat 2023.630 kb on + strand, within ttdTat 2023.631 kb on - strand, within ttdTat 2023.713 kb on - strand, within ttdTat 2023.716 kb on - strand, within ttdTat 2023.751 kb on + strand, within ttdTat 2023.790 kb on + strand, within ttdTat 2023.791 kb on - strand, within ttdTat 2023.791 kb on - strand, within ttdTat 2023.793 kb on + strand, within ttdTat 2023.818 kb on - strand, within ttdTat 2023.818 kb on - strand, within ttdTat 2023.875 kb on - strand, within ttdTat 2023.876 kb on + strand, within ttdTat 2024.029 kb on + strand, within ttdTat 2024.029 kb on + strand, within ttdTat 2024.029 kb on + strand, within ttdTat 2024.030 kb on - strand, within ttdTat 2024.030 kb on - strand, within ttdTat 2024.030 kb on - strand, within ttdTat 2024.063 kb on + strand, within ttdTat 2024.064 kb on - strand, within ttdTat 2024.064 kb on - strand, within ttdTat 2024.139 kb on + strand, within ttdTat 2024.218 kb on + strand, within ttdTat 2024.219 kb on - strand, within ttdT

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,021,822 - +0.5
2,022,165 + +0.5
2,022,165 + -0.3
2,022,180 + +0.8
2,022,181 - -1.5
2,022,181 - -0.2
2,022,182 + +1.2
2,022,182 + +0.1
2,022,182 + -1.1
2,022,182 + +0.6
2,022,183 - -1.4
2,022,183 - -0.5
2,022,183 - -1.2
2,022,183 - -1.5
2,022,183 - -0.4
2,022,183 - +0.3
2,022,216 + +0.2
2,022,216 + +0.2
2,022,216 + -0.3
2,022,237 + -0.5
2,022,252 + +0.2
2,022,252 + -0.3
2,023,284 + -0.7
2,023,290 + +0.3
2,023,330 + -0.9
2,023,330 + +0.5
2,023,330 + -0.2
2,023,331 - +0.2
2,023,386 + +0.7
2,023,387 - -2.1
2,023,417 + +0.0
2,023,418 - +0.8
2,023,418 - +2.5
2,023,443 - +0.8
2,023,450 + +0.1
2,023,451 - +0.5
2,023,475 - +1.5
2,023,475 - +0.5
2,023,481 + ttdT NOLOHH_10465 0.10 -0.1
2,023,482 - ttdT NOLOHH_10465 0.10 +1.2
2,023,482 - ttdT NOLOHH_10465 0.10 -0.8
2,023,592 + ttdT NOLOHH_10465 0.18 +1.9
2,023,592 + ttdT NOLOHH_10465 0.18 +0.8
2,023,592 + ttdT NOLOHH_10465 0.18 +0.2
2,023,592 + ttdT NOLOHH_10465 0.18 -1.6
2,023,593 - ttdT NOLOHH_10465 0.18 -0.2
2,023,593 - ttdT NOLOHH_10465 0.18 -0.7
2,023,593 - ttdT NOLOHH_10465 0.18 +0.1
2,023,593 - ttdT NOLOHH_10465 0.18 -0.7
2,023,594 + ttdT NOLOHH_10465 0.18 -0.3
2,023,594 + ttdT NOLOHH_10465 0.18 -0.4
2,023,595 - ttdT NOLOHH_10465 0.18 +0.4
2,023,595 - ttdT NOLOHH_10465 0.18 -0.9
2,023,595 - ttdT NOLOHH_10465 0.18 +0.5
2,023,595 - ttdT NOLOHH_10465 0.18 +0.6
2,023,595 - ttdT NOLOHH_10465 0.18 -0.4
2,023,630 + ttdT NOLOHH_10465 0.21 -1.8
2,023,631 - ttdT NOLOHH_10465 0.21 +0.4
2,023,713 - ttdT NOLOHH_10465 0.26 -1.5
2,023,716 - ttdT NOLOHH_10465 0.26 -0.3
2,023,751 + ttdT NOLOHH_10465 0.29 -0.7
2,023,790 + ttdT NOLOHH_10465 0.31 -0.3
2,023,791 - ttdT NOLOHH_10465 0.32 +0.2
2,023,791 - ttdT NOLOHH_10465 0.32 +0.7
2,023,793 + ttdT NOLOHH_10465 0.32 +0.3
2,023,818 - ttdT NOLOHH_10465 0.33 -0.2
2,023,818 - ttdT NOLOHH_10465 0.33 +0.2
2,023,875 - ttdT NOLOHH_10465 0.37 -0.3
2,023,876 + ttdT NOLOHH_10465 0.37 +0.3
2,024,029 + ttdT NOLOHH_10465 0.48 +0.2
2,024,029 + ttdT NOLOHH_10465 0.48 +0.7
2,024,029 + ttdT NOLOHH_10465 0.48 +0.8
2,024,030 - ttdT NOLOHH_10465 0.48 +0.7
2,024,030 - ttdT NOLOHH_10465 0.48 -0.4
2,024,030 - ttdT NOLOHH_10465 0.48 -0.5
2,024,063 + ttdT NOLOHH_10465 0.50 -0.4
2,024,064 - ttdT NOLOHH_10465 0.50 -0.9
2,024,064 - ttdT NOLOHH_10465 0.50 +1.1
2,024,139 + ttdT NOLOHH_10465 0.55 +0.2
2,024,218 + ttdT NOLOHH_10465 0.61 +0.6
2,024,219 - ttdT NOLOHH_10465 0.61 +0.8

Or see this region's nucleotide sequence