Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaG and rpsU are separated by 110 nucleotides rpsU and tsaD are separated by 237 nucleotides tsaD and ttdT are separated by 42 nucleotides
NOLOHH_10450: dnaG - DNA primase, at 2,019,964 to 2,021,709
dnaG
NOLOHH_10455: rpsU - 30S ribosomal protein S21, at 2,021,820 to 2,022,035
rpsU
NOLOHH_10460: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 2,022,273 to 2,023,286
tsaD
NOLOHH_10465: ttdT - L-tartrate/succinate antiporter, at 2,023,329 to 2,024,792
ttdT
Position (kb)
2022
2023
2024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2021.822 kb on - strand at 2022.165 kb on + strand at 2022.165 kb on + strand at 2022.180 kb on + strand at 2022.181 kb on - strand at 2022.181 kb on - strand at 2022.182 kb on + strand at 2022.182 kb on + strand at 2022.182 kb on + strand at 2022.182 kb on + strand at 2022.183 kb on - strand at 2022.183 kb on - strand at 2022.183 kb on - strand at 2022.183 kb on - strand at 2022.183 kb on - strand at 2022.183 kb on - strand at 2022.216 kb on + strand at 2022.216 kb on + strand at 2022.216 kb on + strand at 2022.237 kb on + strand at 2022.252 kb on + strand at 2022.252 kb on + strand at 2023.284 kb on + strand at 2023.290 kb on + strand at 2023.330 kb on + strand at 2023.330 kb on + strand at 2023.330 kb on + strand at 2023.331 kb on - strand at 2023.386 kb on + strand at 2023.387 kb on - strand at 2023.417 kb on + strand at 2023.418 kb on - strand at 2023.418 kb on - strand at 2023.443 kb on - strand at 2023.450 kb on + strand at 2023.451 kb on - strand at 2023.475 kb on - strand at 2023.475 kb on - strand at 2023.481 kb on + strand, within ttdT at 2023.482 kb on - strand, within ttdT at 2023.482 kb on - strand, within ttdT at 2023.592 kb on + strand, within ttdT at 2023.592 kb on + strand, within ttdT at 2023.592 kb on + strand, within ttdT at 2023.592 kb on + strand, within ttdT at 2023.593 kb on - strand, within ttdT at 2023.593 kb on - strand, within ttdT at 2023.593 kb on - strand, within ttdT at 2023.593 kb on - strand, within ttdT at 2023.594 kb on + strand, within ttdT at 2023.594 kb on + strand, within ttdT at 2023.595 kb on - strand, within ttdT at 2023.595 kb on - strand, within ttdT at 2023.595 kb on - strand, within ttdT at 2023.595 kb on - strand, within ttdT at 2023.595 kb on - strand, within ttdT at 2023.630 kb on + strand, within ttdT at 2023.631 kb on - strand, within ttdT at 2023.713 kb on - strand, within ttdT at 2023.716 kb on - strand, within ttdT at 2023.751 kb on + strand, within ttdT at 2023.790 kb on + strand, within ttdT at 2023.791 kb on - strand, within ttdT at 2023.791 kb on - strand, within ttdT at 2023.793 kb on + strand, within ttdT at 2023.818 kb on - strand, within ttdT at 2023.818 kb on - strand, within ttdT at 2023.875 kb on - strand, within ttdT at 2023.876 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.063 kb on + strand, within ttdT at 2024.064 kb on - strand, within ttdT at 2024.064 kb on - strand, within ttdT at 2024.139 kb on + strand, within ttdT at 2024.218 kb on + strand, within ttdT at 2024.219 kb on - strand, within ttdT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 2,021,822 - +0.5 2,022,165 + +0.5 2,022,165 + -0.3 2,022,180 + +0.8 2,022,181 - -1.5 2,022,181 - -0.2 2,022,182 + +1.2 2,022,182 + +0.1 2,022,182 + -1.1 2,022,182 + +0.6 2,022,183 - -1.4 2,022,183 - -0.5 2,022,183 - -1.2 2,022,183 - -1.5 2,022,183 - -0.4 2,022,183 - +0.3 2,022,216 + +0.2 2,022,216 + +0.2 2,022,216 + -0.3 2,022,237 + -0.5 2,022,252 + +0.2 2,022,252 + -0.3 2,023,284 + -0.7 2,023,290 + +0.3 2,023,330 + -0.9 2,023,330 + +0.5 2,023,330 + -0.2 2,023,331 - +0.2 2,023,386 + +0.7 2,023,387 - -2.1 2,023,417 + +0.0 2,023,418 - +0.8 2,023,418 - +2.5 2,023,443 - +0.8 2,023,450 + +0.1 2,023,451 - +0.5 2,023,475 - +1.5 2,023,475 - +0.5 2,023,481 + ttdT NOLOHH_10465 0.10 -0.1 2,023,482 - ttdT NOLOHH_10465 0.10 +1.2 2,023,482 - ttdT NOLOHH_10465 0.10 -0.8 2,023,592 + ttdT NOLOHH_10465 0.18 +1.9 2,023,592 + ttdT NOLOHH_10465 0.18 +0.8 2,023,592 + ttdT NOLOHH_10465 0.18 +0.2 2,023,592 + ttdT NOLOHH_10465 0.18 -1.6 2,023,593 - ttdT NOLOHH_10465 0.18 -0.2 2,023,593 - ttdT NOLOHH_10465 0.18 -0.7 2,023,593 - ttdT NOLOHH_10465 0.18 +0.1 2,023,593 - ttdT NOLOHH_10465 0.18 -0.7 2,023,594 + ttdT NOLOHH_10465 0.18 -0.3 2,023,594 + ttdT NOLOHH_10465 0.18 -0.4 2,023,595 - ttdT NOLOHH_10465 0.18 +0.4 2,023,595 - ttdT NOLOHH_10465 0.18 -0.9 2,023,595 - ttdT NOLOHH_10465 0.18 +0.5 2,023,595 - ttdT NOLOHH_10465 0.18 +0.6 2,023,595 - ttdT NOLOHH_10465 0.18 -0.4 2,023,630 + ttdT NOLOHH_10465 0.21 -1.8 2,023,631 - ttdT NOLOHH_10465 0.21 +0.4 2,023,713 - ttdT NOLOHH_10465 0.26 -1.5 2,023,716 - ttdT NOLOHH_10465 0.26 -0.3 2,023,751 + ttdT NOLOHH_10465 0.29 -0.7 2,023,790 + ttdT NOLOHH_10465 0.31 -0.3 2,023,791 - ttdT NOLOHH_10465 0.32 +0.2 2,023,791 - ttdT NOLOHH_10465 0.32 +0.7 2,023,793 + ttdT NOLOHH_10465 0.32 +0.3 2,023,818 - ttdT NOLOHH_10465 0.33 -0.2 2,023,818 - ttdT NOLOHH_10465 0.33 +0.2 2,023,875 - ttdT NOLOHH_10465 0.37 -0.3 2,023,876 + ttdT NOLOHH_10465 0.37 +0.3 2,024,029 + ttdT NOLOHH_10465 0.48 +0.2 2,024,029 + ttdT NOLOHH_10465 0.48 +0.7 2,024,029 + ttdT NOLOHH_10465 0.48 +0.8 2,024,030 - ttdT NOLOHH_10465 0.48 +0.7 2,024,030 - ttdT NOLOHH_10465 0.48 -0.4 2,024,030 - ttdT NOLOHH_10465 0.48 -0.5 2,024,063 + ttdT NOLOHH_10465 0.50 -0.4 2,024,064 - ttdT NOLOHH_10465 0.50 -0.9 2,024,064 - ttdT NOLOHH_10465 0.50 +1.1 2,024,139 + ttdT NOLOHH_10465 0.55 +0.2 2,024,218 + ttdT NOLOHH_10465 0.61 +0.6 2,024,219 - ttdT NOLOHH_10465 0.61 +0.8
Or see this region's nucleotide sequence