Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09925

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfB and rbfA are separated by 163 nucleotidesrbfA and truB overlap by 1 nucleotidestruB and rpsO are separated by 148 nucleotidesrpsO and pnp are separated by 246 nucleotides NOLOHH_09910: infB - Translation initiation factor IF-2, at 1,909,371 to 1,912,043 infB NOLOHH_09920: rbfA - 30S ribosome-binding factor RbfA, at 1,912,207 to 1,912,608 rbfA NOLOHH_09925: truB - tRNA pseudouridine(55) synthase TruB, at 1,912,608 to 1,913,552 truB NOLOHH_09930: rpsO - 30S ribosomal protein S15, at 1,913,701 to 1,913,970 rpsO NOLOHH_09940: pnp - polyribonucleotide nucleotidyltransferase, at 1,914,217 to 1,916,352 pnp Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1912.031 kb on + strandat 1912.031 kb on + strandat 1912.031 kb on + strandat 1912.076 kb on + strandat 1912.607 kb on - strandat 1912.673 kb on + strandat 1912.674 kb on - strandat 1912.674 kb on - strandat 1912.713 kb on + strand, within truBat 1912.713 kb on + strand, within truBat 1912.869 kb on - strand, within truBat 1912.917 kb on - strand, within truBat 1912.984 kb on - strand, within truBat 1912.998 kb on + strand, within truBat 1913.023 kb on - strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.142 kb on + strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.143 kb on - strand, within truBat 1913.198 kb on + strand, within truBat 1913.198 kb on + strand, within truBat 1913.198 kb on + strand, within truBat 1913.199 kb on - strand, within truBat 1913.199 kb on - strand, within truBat 1913.225 kb on + strand, within truBat 1913.226 kb on - strand, within truBat 1913.230 kb on - strand, within truBat 1913.298 kb on - strand, within truBat 1913.314 kb on + strand, within truBat 1913.394 kb on + strand, within truBat 1913.395 kb on - strand, within truBat 1913.421 kb on - strand, within truBat 1913.602 kb on + strandat 1913.621 kb on + strandat 1913.638 kb on + strandat 1914.044 kb on + strandat 1914.044 kb on + strandat 1914.049 kb on + strandat 1914.049 kb on + strandat 1914.049 kb on + strandat 1914.050 kb on - strandat 1914.050 kb on - strandat 1914.050 kb on - strandat 1914.050 kb on - strandat 1914.050 kb on - strandat 1914.050 kb on - strandat 1914.114 kb on + strandat 1914.114 kb on + strandat 1914.114 kb on + strandat 1914.114 kb on + strandat 1914.114 kb on + strandat 1914.114 kb on + strandat 1914.137 kb on + strandat 1914.166 kb on - strandat 1914.188 kb on - strandat 1914.213 kb on + strandat 1914.213 kb on + strandat 1914.214 kb on - strandat 1914.214 kb on - strandat 1914.222 kb on + strandat 1914.238 kb on - strandat 1914.309 kb on + strandat 1914.403 kb on + strandat 1914.403 kb on + strandat 1914.404 kb on - strandat 1914.414 kb on + strandat 1914.414 kb on + strandat 1914.414 kb on + strandat 1914.414 kb on + strandat 1914.418 kb on + strandat 1914.418 kb on + strandat 1914.419 kb on - strandat 1914.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,912,031 + -1.5
1,912,031 + -0.1
1,912,031 + -2.3
1,912,076 + +0.3
1,912,607 - -1.3
1,912,673 + +0.5
1,912,674 - +0.8
1,912,674 - -0.2
1,912,713 + truB NOLOHH_09925 0.11 -0.6
1,912,713 + truB NOLOHH_09925 0.11 +2.1
1,912,869 - truB NOLOHH_09925 0.28 -0.8
1,912,917 - truB NOLOHH_09925 0.33 -0.1
1,912,984 - truB NOLOHH_09925 0.40 -0.5
1,912,998 + truB NOLOHH_09925 0.41 +0.1
1,913,023 - truB NOLOHH_09925 0.44 +1.5
1,913,142 + truB NOLOHH_09925 0.57 +0.3
1,913,142 + truB NOLOHH_09925 0.57 +0.9
1,913,142 + truB NOLOHH_09925 0.57 -1.1
1,913,142 + truB NOLOHH_09925 0.57 +0.1
1,913,142 + truB NOLOHH_09925 0.57 -0.3
1,913,142 + truB NOLOHH_09925 0.57 -0.7
1,913,142 + truB NOLOHH_09925 0.57 -0.9
1,913,142 + truB NOLOHH_09925 0.57 +0.5
1,913,142 + truB NOLOHH_09925 0.57 +0.1
1,913,142 + truB NOLOHH_09925 0.57 -0.5
1,913,142 + truB NOLOHH_09925 0.57 +0.5
1,913,143 - truB NOLOHH_09925 0.57 +1.1
1,913,143 - truB NOLOHH_09925 0.57 +0.7
1,913,143 - truB NOLOHH_09925 0.57 +0.5
1,913,143 - truB NOLOHH_09925 0.57 +1.8
1,913,143 - truB NOLOHH_09925 0.57 -0.7
1,913,143 - truB NOLOHH_09925 0.57 +0.5
1,913,143 - truB NOLOHH_09925 0.57 -1.2
1,913,143 - truB NOLOHH_09925 0.57 -0.3
1,913,198 + truB NOLOHH_09925 0.62 +0.2
1,913,198 + truB NOLOHH_09925 0.62 -0.9
1,913,198 + truB NOLOHH_09925 0.62 -1.5
1,913,199 - truB NOLOHH_09925 0.63 +0.2
1,913,199 - truB NOLOHH_09925 0.63 -1.8
1,913,225 + truB NOLOHH_09925 0.65 -0.2
1,913,226 - truB NOLOHH_09925 0.65 +0.5
1,913,230 - truB NOLOHH_09925 0.66 -0.0
1,913,298 - truB NOLOHH_09925 0.73 -1.9
1,913,314 + truB NOLOHH_09925 0.75 +0.5
1,913,394 + truB NOLOHH_09925 0.83 +0.4
1,913,395 - truB NOLOHH_09925 0.83 -1.5
1,913,421 - truB NOLOHH_09925 0.86 -0.1
1,913,602 + -1.1
1,913,621 + -2.1
1,913,638 + +0.5
1,914,044 + -0.1
1,914,044 + -0.5
1,914,049 + -0.2
1,914,049 + -1.5
1,914,049 + +0.5
1,914,050 - -0.2
1,914,050 - -1.1
1,914,050 - +0.5
1,914,050 - -1.2
1,914,050 - +1.5
1,914,050 - +0.2
1,914,114 + -0.1
1,914,114 + -0.7
1,914,114 + -0.2
1,914,114 + -1.1
1,914,114 + -1.1
1,914,114 + +0.1
1,914,137 + -2.5
1,914,166 - -1.7
1,914,188 - -1.0
1,914,213 + -0.3
1,914,213 + -0.5
1,914,214 - +0.5
1,914,214 - +0.9
1,914,222 + +0.5
1,914,238 - -1.1
1,914,309 + -0.5
1,914,403 + -1.5
1,914,403 + -3.1
1,914,404 - +0.5
1,914,414 + +0.0
1,914,414 + -1.9
1,914,414 + -1.1
1,914,414 + -2.1
1,914,418 + -0.5
1,914,418 + -0.5
1,914,419 - -1.8
1,914,419 - -0.5

Or see this region's nucleotide sequence