Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt infB and rbfA are separated by 163 nucleotides rbfA and truB overlap by 1 nucleotides truB and rpsO are separated by 148 nucleotides rpsO and pnp are separated by 246 nucleotides
NOLOHH_09910: infB - Translation initiation factor IF-2, at 1,909,371 to 1,912,043
infB
NOLOHH_09920: rbfA - 30S ribosome-binding factor RbfA, at 1,912,207 to 1,912,608
rbfA
NOLOHH_09925: truB - tRNA pseudouridine(55) synthase TruB, at 1,912,608 to 1,913,552
truB
NOLOHH_09930: rpsO - 30S ribosomal protein S15, at 1,913,701 to 1,913,970
rpsO
NOLOHH_09940: pnp - polyribonucleotide nucleotidyltransferase, at 1,914,217 to 1,916,352
pnp
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1912.031 kb on + strand at 1912.031 kb on + strand at 1912.031 kb on + strand at 1912.076 kb on + strand at 1912.607 kb on - strand at 1912.673 kb on + strand at 1912.674 kb on - strand at 1912.674 kb on - strand at 1912.713 kb on + strand, within truB at 1912.713 kb on + strand, within truB at 1912.869 kb on - strand, within truB at 1912.917 kb on - strand, within truB at 1912.984 kb on - strand, within truB at 1912.998 kb on + strand, within truB at 1913.023 kb on - strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.142 kb on + strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.143 kb on - strand, within truB at 1913.198 kb on + strand, within truB at 1913.198 kb on + strand, within truB at 1913.198 kb on + strand, within truB at 1913.199 kb on - strand, within truB at 1913.199 kb on - strand, within truB at 1913.225 kb on + strand, within truB at 1913.226 kb on - strand, within truB at 1913.230 kb on - strand, within truB at 1913.298 kb on - strand, within truB at 1913.314 kb on + strand, within truB at 1913.394 kb on + strand, within truB at 1913.395 kb on - strand, within truB at 1913.421 kb on - strand, within truB at 1913.602 kb on + strand at 1913.621 kb on + strand at 1913.638 kb on + strand at 1914.044 kb on + strand at 1914.044 kb on + strand at 1914.049 kb on + strand at 1914.049 kb on + strand at 1914.049 kb on + strand at 1914.050 kb on - strand at 1914.050 kb on - strand at 1914.050 kb on - strand at 1914.050 kb on - strand at 1914.050 kb on - strand at 1914.050 kb on - strand at 1914.114 kb on + strand at 1914.114 kb on + strand at 1914.114 kb on + strand at 1914.114 kb on + strand at 1914.114 kb on + strand at 1914.114 kb on + strand at 1914.137 kb on + strand at 1914.166 kb on - strand at 1914.188 kb on - strand at 1914.213 kb on + strand at 1914.213 kb on + strand at 1914.214 kb on - strand at 1914.214 kb on - strand at 1914.222 kb on + strand at 1914.238 kb on - strand at 1914.309 kb on + strand at 1914.403 kb on + strand at 1914.403 kb on + strand at 1914.404 kb on - strand at 1914.414 kb on + strand at 1914.414 kb on + strand at 1914.414 kb on + strand at 1914.414 kb on + strand at 1914.418 kb on + strand at 1914.418 kb on + strand at 1914.419 kb on - strand at 1914.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,912,031 + -1.5 1,912,031 + -0.1 1,912,031 + -2.3 1,912,076 + +0.3 1,912,607 - -1.3 1,912,673 + +0.5 1,912,674 - +0.8 1,912,674 - -0.2 1,912,713 + truB NOLOHH_09925 0.11 -0.6 1,912,713 + truB NOLOHH_09925 0.11 +2.1 1,912,869 - truB NOLOHH_09925 0.28 -0.8 1,912,917 - truB NOLOHH_09925 0.33 -0.1 1,912,984 - truB NOLOHH_09925 0.40 -0.5 1,912,998 + truB NOLOHH_09925 0.41 +0.1 1,913,023 - truB NOLOHH_09925 0.44 +1.5 1,913,142 + truB NOLOHH_09925 0.57 +0.3 1,913,142 + truB NOLOHH_09925 0.57 +0.9 1,913,142 + truB NOLOHH_09925 0.57 -1.1 1,913,142 + truB NOLOHH_09925 0.57 +0.1 1,913,142 + truB NOLOHH_09925 0.57 -0.3 1,913,142 + truB NOLOHH_09925 0.57 -0.7 1,913,142 + truB NOLOHH_09925 0.57 -0.9 1,913,142 + truB NOLOHH_09925 0.57 +0.5 1,913,142 + truB NOLOHH_09925 0.57 +0.1 1,913,142 + truB NOLOHH_09925 0.57 -0.5 1,913,142 + truB NOLOHH_09925 0.57 +0.5 1,913,143 - truB NOLOHH_09925 0.57 +1.1 1,913,143 - truB NOLOHH_09925 0.57 +0.7 1,913,143 - truB NOLOHH_09925 0.57 +0.5 1,913,143 - truB NOLOHH_09925 0.57 +1.8 1,913,143 - truB NOLOHH_09925 0.57 -0.7 1,913,143 - truB NOLOHH_09925 0.57 +0.5 1,913,143 - truB NOLOHH_09925 0.57 -1.2 1,913,143 - truB NOLOHH_09925 0.57 -0.3 1,913,198 + truB NOLOHH_09925 0.62 +0.2 1,913,198 + truB NOLOHH_09925 0.62 -0.9 1,913,198 + truB NOLOHH_09925 0.62 -1.5 1,913,199 - truB NOLOHH_09925 0.63 +0.2 1,913,199 - truB NOLOHH_09925 0.63 -1.8 1,913,225 + truB NOLOHH_09925 0.65 -0.2 1,913,226 - truB NOLOHH_09925 0.65 +0.5 1,913,230 - truB NOLOHH_09925 0.66 -0.0 1,913,298 - truB NOLOHH_09925 0.73 -1.9 1,913,314 + truB NOLOHH_09925 0.75 +0.5 1,913,394 + truB NOLOHH_09925 0.83 +0.4 1,913,395 - truB NOLOHH_09925 0.83 -1.5 1,913,421 - truB NOLOHH_09925 0.86 -0.1 1,913,602 + -1.1 1,913,621 + -2.1 1,913,638 + +0.5 1,914,044 + -0.1 1,914,044 + -0.5 1,914,049 + -0.2 1,914,049 + -1.5 1,914,049 + +0.5 1,914,050 - -0.2 1,914,050 - -1.1 1,914,050 - +0.5 1,914,050 - -1.2 1,914,050 - +1.5 1,914,050 - +0.2 1,914,114 + -0.1 1,914,114 + -0.7 1,914,114 + -0.2 1,914,114 + -1.1 1,914,114 + -1.1 1,914,114 + +0.1 1,914,137 + -2.5 1,914,166 - -1.7 1,914,188 - -1.0 1,914,213 + -0.3 1,914,213 + -0.5 1,914,214 - +0.5 1,914,214 - +0.9 1,914,222 + +0.5 1,914,238 - -1.1 1,914,309 + -0.5 1,914,403 + -1.5 1,914,403 + -3.1 1,914,404 - +0.5 1,914,414 + +0.0 1,914,414 + -1.9 1,914,414 + -1.1 1,914,414 + -2.1 1,914,418 + -0.5 1,914,418 + -0.5 1,914,419 - -1.8 1,914,419 - -0.5
Or see this region's nucleotide sequence