Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09515

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmreB and mreC are separated by 65 nucleotidesmreC and mreD overlap by 1 nucleotidesmreD and yhdE are separated by 8 nucleotides NOLOHH_09510: mreB - rod shape-determining protein MreB, at 1,831,472 to 1,832,515 mreB NOLOHH_09515: mreC - rod shape-determining protein MreC, at 1,832,581 to 1,833,684 mreC NOLOHH_09520: mreD - rod shape-determining protein MreD, at 1,833,684 to 1,834,172 mreD NOLOHH_09525: yhdE - nucleoside triphosphate pyrophosphatase YhdE, at 1,834,181 to 1,834,774 yhdE Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -2 -1 0 1 2at 1832.513 kb on + strandat 1832.513 kb on + strandat 1832.561 kb on + strandat 1832.569 kb on + strandat 1832.569 kb on + strandat 1832.569 kb on + strandat 1832.575 kb on + strandat 1834.143 kb on - strandat 1834.180 kb on + strandat 1834.194 kb on - strandat 1834.197 kb on + strandat 1834.198 kb on - strandat 1834.258 kb on + strand, within yhdEat 1834.258 kb on + strand, within yhdEat 1834.258 kb on + strand, within yhdEat 1834.258 kb on + strand, within yhdEat 1834.265 kb on - strand, within yhdEat 1834.265 kb on - strand, within yhdEat 1834.311 kb on - strand, within yhdEat 1834.311 kb on - strand, within yhdEat 1834.311 kb on - strand, within yhdEat 1834.390 kb on + strand, within yhdEat 1834.391 kb on - strand, within yhdEat 1834.391 kb on - strand, within yhdEat 1834.394 kb on - strand, within yhdEat 1834.394 kb on - strand, within yhdEat 1834.611 kb on + strand, within yhdEat 1834.615 kb on + strand, within yhdEat 1834.628 kb on + strand, within yhdEat 1834.668 kb on + strand, within yhdEat 1834.669 kb on - strand, within yhdEat 1834.679 kb on + strand, within yhdE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,832,513 + -0.8
1,832,513 + -0.0
1,832,561 + +0.1
1,832,569 + +0.4
1,832,569 + +0.3
1,832,569 + +0.1
1,832,575 + -0.3
1,834,143 - -2.1
1,834,180 + -1.9
1,834,194 - -0.5
1,834,197 + +0.3
1,834,198 - +0.5
1,834,258 + yhdE NOLOHH_09525 0.13 -0.8
1,834,258 + yhdE NOLOHH_09525 0.13 +0.7
1,834,258 + yhdE NOLOHH_09525 0.13 -0.0
1,834,258 + yhdE NOLOHH_09525 0.13 -0.5
1,834,265 - yhdE NOLOHH_09525 0.14 +1.8
1,834,265 - yhdE NOLOHH_09525 0.14 +0.6
1,834,311 - yhdE NOLOHH_09525 0.22 -0.4
1,834,311 - yhdE NOLOHH_09525 0.22 -0.6
1,834,311 - yhdE NOLOHH_09525 0.22 +0.3
1,834,390 + yhdE NOLOHH_09525 0.35 -0.0
1,834,391 - yhdE NOLOHH_09525 0.35 +0.1
1,834,391 - yhdE NOLOHH_09525 0.35 +0.5
1,834,394 - yhdE NOLOHH_09525 0.36 +0.5
1,834,394 - yhdE NOLOHH_09525 0.36 +0.9
1,834,611 + yhdE NOLOHH_09525 0.72 +0.6
1,834,615 + yhdE NOLOHH_09525 0.73 +0.9
1,834,628 + yhdE NOLOHH_09525 0.75 -0.5
1,834,668 + yhdE NOLOHH_09525 0.82 +0.9
1,834,669 - yhdE NOLOHH_09525 0.82 +0.1
1,834,679 + yhdE NOLOHH_09525 0.84 +0.3

Or see this region's nucleotide sequence