Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mreB and mreC are separated by 65 nucleotides mreC and mreD overlap by 1 nucleotides mreD and yhdE are separated by 8 nucleotides
NOLOHH_09510: mreB - rod shape-determining protein MreB, at 1,831,472 to 1,832,515
mreB
NOLOHH_09515: mreC - rod shape-determining protein MreC, at 1,832,581 to 1,833,684
mreC
NOLOHH_09520: mreD - rod shape-determining protein MreD, at 1,833,684 to 1,834,172
mreD
NOLOHH_09525: yhdE - nucleoside triphosphate pyrophosphatase YhdE, at 1,834,181 to 1,834,774
yhdE
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1832.513 kb on + strand at 1832.513 kb on + strand at 1832.561 kb on + strand at 1832.569 kb on + strand at 1832.569 kb on + strand at 1832.569 kb on + strand at 1832.575 kb on + strand at 1834.143 kb on - strand at 1834.180 kb on + strand at 1834.194 kb on - strand at 1834.197 kb on + strand at 1834.198 kb on - strand at 1834.258 kb on + strand, within yhdE at 1834.258 kb on + strand, within yhdE at 1834.258 kb on + strand, within yhdE at 1834.258 kb on + strand, within yhdE at 1834.265 kb on - strand, within yhdE at 1834.265 kb on - strand, within yhdE at 1834.311 kb on - strand, within yhdE at 1834.311 kb on - strand, within yhdE at 1834.311 kb on - strand, within yhdE at 1834.390 kb on + strand, within yhdE at 1834.391 kb on - strand, within yhdE at 1834.391 kb on - strand, within yhdE at 1834.394 kb on - strand, within yhdE at 1834.394 kb on - strand, within yhdE at 1834.611 kb on + strand, within yhdE at 1834.615 kb on + strand, within yhdE at 1834.628 kb on + strand, within yhdE at 1834.668 kb on + strand, within yhdE at 1834.669 kb on - strand, within yhdE at 1834.679 kb on + strand, within yhdE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,832,513 + -0.8 1,832,513 + -0.0 1,832,561 + +0.1 1,832,569 + +0.4 1,832,569 + +0.3 1,832,569 + +0.1 1,832,575 + -0.3 1,834,143 - -2.1 1,834,180 + -1.9 1,834,194 - -0.5 1,834,197 + +0.3 1,834,198 - +0.5 1,834,258 + yhdE NOLOHH_09525 0.13 -0.8 1,834,258 + yhdE NOLOHH_09525 0.13 +0.7 1,834,258 + yhdE NOLOHH_09525 0.13 -0.0 1,834,258 + yhdE NOLOHH_09525 0.13 -0.5 1,834,265 - yhdE NOLOHH_09525 0.14 +1.8 1,834,265 - yhdE NOLOHH_09525 0.14 +0.6 1,834,311 - yhdE NOLOHH_09525 0.22 -0.4 1,834,311 - yhdE NOLOHH_09525 0.22 -0.6 1,834,311 - yhdE NOLOHH_09525 0.22 +0.3 1,834,390 + yhdE NOLOHH_09525 0.35 -0.0 1,834,391 - yhdE NOLOHH_09525 0.35 +0.1 1,834,391 - yhdE NOLOHH_09525 0.35 +0.5 1,834,394 - yhdE NOLOHH_09525 0.36 +0.5 1,834,394 - yhdE NOLOHH_09525 0.36 +0.9 1,834,611 + yhdE NOLOHH_09525 0.72 +0.6 1,834,615 + yhdE NOLOHH_09525 0.73 +0.9 1,834,628 + yhdE NOLOHH_09525 0.75 -0.5 1,834,668 + yhdE NOLOHH_09525 0.82 +0.9 1,834,669 - yhdE NOLOHH_09525 0.82 +0.1 1,834,679 + yhdE NOLOHH_09525 0.84 +0.3
Or see this region's nucleotide sequence