Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asd and yhgO are separated by 73 nucleotides yhgO and glgB are separated by 157 nucleotides glgB and glgX overlap by 4 nucleotides
NOLOHH_08665: asd - aspartate-semialdehyde dehydrogenase, at 1,675,015 to 1,676,118
asd
NOLOHH_08670: yhgO - Protein YhgO, at 1,676,192 to 1,676,233
yhgO
NOLOHH_08675: glgB - 1,4-alpha-glucan branching enzyme, at 1,676,391 to 1,678,577
glgB
NOLOHH_08680: glgX - glycogen debranching protein GlgX, at 1,678,574 to 1,680,547
glgX
Position (kb)
1676
1677
1678
1679 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1676.116 kb on + strand at 1676.131 kb on - strand at 1676.165 kb on + strand at 1676.165 kb on + strand at 1676.165 kb on + strand at 1676.166 kb on - strand at 1676.166 kb on - strand at 1676.168 kb on + strand at 1676.168 kb on + strand at 1676.168 kb on + strand at 1676.176 kb on + strand at 1676.176 kb on + strand at 1676.176 kb on + strand at 1676.177 kb on - strand at 1676.177 kb on - strand at 1676.177 kb on - strand at 1676.177 kb on - strand at 1676.208 kb on + strand, within yhgO at 1676.208 kb on + strand, within yhgO at 1676.209 kb on - strand, within yhgO at 1676.212 kb on + strand, within yhgO at 1676.213 kb on - strand, within yhgO at 1676.213 kb on - strand, within yhgO at 1676.245 kb on + strand at 1676.245 kb on + strand at 1676.246 kb on - strand at 1676.246 kb on - strand at 1676.253 kb on + strand at 1676.254 kb on - strand at 1676.265 kb on + strand at 1676.265 kb on + strand at 1676.373 kb on + strand at 1676.374 kb on - strand at 1676.374 kb on - strand at 1676.374 kb on - strand at 1676.409 kb on - strand at 1676.421 kb on - strand at 1676.429 kb on - strand at 1676.474 kb on + strand at 1676.475 kb on - strand at 1676.475 kb on - strand at 1676.618 kb on + strand, within glgB at 1676.725 kb on + strand, within glgB at 1676.739 kb on - strand, within glgB at 1676.765 kb on - strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.780 kb on + strand, within glgB at 1676.781 kb on - strand, within glgB at 1676.783 kb on + strand, within glgB at 1676.783 kb on + strand, within glgB at 1676.783 kb on + strand, within glgB at 1676.784 kb on - strand, within glgB at 1676.802 kb on - strand, within glgB at 1676.858 kb on + strand, within glgB at 1676.859 kb on - strand, within glgB at 1676.859 kb on - strand, within glgB at 1676.863 kb on - strand, within glgB at 1676.897 kb on + strand, within glgB at 1676.953 kb on - strand, within glgB at 1676.953 kb on - strand, within glgB at 1676.955 kb on - strand, within glgB at 1676.955 kb on - strand, within glgB at 1676.958 kb on + strand, within glgB at 1676.958 kb on + strand, within glgB at 1676.959 kb on - strand, within glgB at 1676.959 kb on - strand, within glgB at 1677.048 kb on - strand, within glgB at 1677.048 kb on - strand, within glgB at 1677.073 kb on + strand, within glgB at 1677.073 kb on + strand, within glgB at 1677.126 kb on + strand, within glgB at 1677.127 kb on - strand, within glgB at 1677.127 kb on - strand, within glgB at 1677.213 kb on + strand, within glgB at 1677.214 kb on - strand, within glgB at 1677.218 kb on + strand, within glgB at 1677.218 kb on + strand, within glgB at 1677.219 kb on - strand, within glgB at 1677.248 kb on - strand, within glgB at 1677.307 kb on - strand, within glgB at 1677.307 kb on - strand, within glgB at 1677.349 kb on - strand, within glgB at 1677.460 kb on - strand, within glgB at 1677.486 kb on + strand, within glgB at 1677.486 kb on + strand, within glgB at 1677.487 kb on - strand, within glgB at 1677.513 kb on + strand, within glgB at 1677.513 kb on + strand, within glgB at 1677.513 kb on + strand, within glgB at 1677.513 kb on + strand, within glgB at 1677.514 kb on - strand, within glgB at 1677.514 kb on - strand, within glgB at 1677.514 kb on - strand, within glgB at 1677.519 kb on + strand, within glgB at 1677.519 kb on + strand, within glgB at 1677.519 kb on + strand, within glgB at 1677.519 kb on + strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.520 kb on - strand, within glgB at 1677.624 kb on + strand, within glgB at 1677.633 kb on + strand, within glgB at 1677.713 kb on + strand, within glgB at 1677.713 kb on + strand, within glgB at 1677.713 kb on + strand, within glgB at 1677.713 kb on + strand, within glgB at 1677.803 kb on + strand, within glgB at 1677.826 kb on - strand, within glgB at 1677.864 kb on + strand, within glgB at 1677.864 kb on + strand, within glgB at 1677.865 kb on - strand, within glgB at 1677.865 kb on - strand, within glgB at 1677.865 kb on - strand, within glgB at 1677.894 kb on + strand, within glgB at 1677.895 kb on - strand, within glgB at 1677.927 kb on + strand, within glgB at 1677.928 kb on - strand, within glgB at 1677.928 kb on - strand, within glgB at 1677.928 kb on - strand, within glgB at 1677.934 kb on - strand, within glgB at 1677.934 kb on - strand, within glgB at 1678.048 kb on - strand, within glgB at 1678.050 kb on + strand, within glgB at 1678.050 kb on + strand, within glgB at 1678.050 kb on + strand, within glgB at 1678.051 kb on - strand, within glgB at 1678.051 kb on - strand, within glgB at 1678.051 kb on - strand, within glgB at 1678.051 kb on - strand, within glgB at 1678.219 kb on - strand, within glgB at 1678.229 kb on + strand, within glgB at 1678.229 kb on + strand, within glgB at 1678.230 kb on - strand, within glgB at 1678.326 kb on - strand, within glgB at 1678.361 kb on + strand at 1678.362 kb on - strand at 1678.362 kb on - strand at 1678.447 kb on - strand at 1678.458 kb on - strand at 1678.458 kb on - strand at 1678.480 kb on + strand at 1678.481 kb on - strand at 1678.522 kb on + strand at 1678.550 kb on + strand at 1678.551 kb on - strand at 1678.551 kb on - strand at 1678.619 kb on + strand at 1678.620 kb on - strand at 1678.672 kb on - strand at 1678.713 kb on - strand at 1678.751 kb on + strand at 1678.781 kb on + strand, within glgX at 1678.885 kb on + strand, within glgX at 1678.915 kb on + strand, within glgX at 1678.915 kb on + strand, within glgX at 1678.916 kb on - strand, within glgX at 1678.916 kb on - strand, within glgX at 1678.979 kb on + strand, within glgX at 1678.980 kb on - strand, within glgX at 1678.980 kb on - strand, within glgX at 1679.034 kb on - strand, within glgX at 1679.034 kb on - strand, within glgX at 1679.060 kb on + strand, within glgX at 1679.060 kb on + strand, within glgX at 1679.061 kb on - strand, within glgX at 1679.061 kb on - strand, within glgX at 1679.061 kb on - strand, within glgX at 1679.061 kb on - strand, within glgX at 1679.099 kb on + strand, within glgX at 1679.099 kb on + strand, within glgX at 1679.100 kb on - strand, within glgX at 1679.100 kb on - strand, within glgX at 1679.100 kb on - strand, within glgX at 1679.101 kb on + strand, within glgX at 1679.101 kb on + strand, within glgX at 1679.102 kb on - strand, within glgX at 1679.102 kb on - strand, within glgX at 1679.217 kb on + strand, within glgX at 1679.217 kb on + strand, within glgX at 1679.217 kb on + strand, within glgX at 1679.217 kb on + strand, within glgX at 1679.221 kb on + strand, within glgX at 1679.221 kb on + strand, within glgX at 1679.221 kb on + strand, within glgX at 1679.221 kb on + strand, within glgX at 1679.221 kb on + strand, within glgX at 1679.222 kb on - strand, within glgX at 1679.226 kb on - strand, within glgX at 1679.271 kb on - strand, within glgX at 1679.329 kb on + strand, within glgX at 1679.330 kb on - strand, within glgX at 1679.371 kb on + strand, within glgX at 1679.371 kb on + strand, within glgX at 1679.372 kb on - strand, within glgX at 1679.372 kb on - strand, within glgX at 1679.428 kb on + strand, within glgX at 1679.428 kb on + strand, within glgX at 1679.432 kb on + strand, within glgX at 1679.432 kb on + strand, within glgX at 1679.432 kb on + strand, within glgX at 1679.432 kb on + strand, within glgX at 1679.432 kb on + strand, within glgX at 1679.433 kb on - strand, within glgX at 1679.433 kb on - strand, within glgX at 1679.435 kb on + strand, within glgX at 1679.435 kb on + strand, within glgX at 1679.519 kb on + strand, within glgX at 1679.547 kb on + strand, within glgX
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,676,116 + -0.2 1,676,131 - -2.1 1,676,165 + -0.0 1,676,165 + -1.2 1,676,165 + -0.5 1,676,166 - +0.6 1,676,166 - +1.2 1,676,168 + +0.1 1,676,168 + +0.2 1,676,168 + -0.8 1,676,176 + -0.0 1,676,176 + -0.3 1,676,176 + +0.0 1,676,177 - -0.2 1,676,177 - +0.2 1,676,177 - -0.9 1,676,177 - -1.4 1,676,208 + yhgO NOLOHH_08670 0.38 -0.3 1,676,208 + yhgO NOLOHH_08670 0.38 +0.2 1,676,209 - yhgO NOLOHH_08670 0.40 -1.0 1,676,212 + yhgO NOLOHH_08670 0.48 -0.1 1,676,213 - yhgO NOLOHH_08670 0.50 -0.1 1,676,213 - yhgO NOLOHH_08670 0.50 -0.6 1,676,245 + -1.4 1,676,245 + +1.8 1,676,246 - +0.3 1,676,246 - +0.1 1,676,253 + -0.1 1,676,254 - -0.8 1,676,265 + +3.1 1,676,265 + +0.5 1,676,373 + +1.3 1,676,374 - +0.4 1,676,374 - -0.3 1,676,374 - +0.3 1,676,409 - -1.5 1,676,421 - +0.8 1,676,429 - -1.1 1,676,474 + +0.9 1,676,475 - -0.4 1,676,475 - +0.9 1,676,618 + glgB NOLOHH_08675 0.10 +0.3 1,676,725 + glgB NOLOHH_08675 0.15 -0.5 1,676,739 - glgB NOLOHH_08675 0.16 -0.3 1,676,765 - glgB NOLOHH_08675 0.17 -0.7 1,676,780 + glgB NOLOHH_08675 0.18 -0.2 1,676,780 + glgB NOLOHH_08675 0.18 -1.8 1,676,780 + glgB NOLOHH_08675 0.18 -0.2 1,676,780 + glgB NOLOHH_08675 0.18 +0.4 1,676,780 + glgB NOLOHH_08675 0.18 -0.1 1,676,780 + glgB NOLOHH_08675 0.18 -1.1 1,676,781 - glgB NOLOHH_08675 0.18 -0.2 1,676,783 + glgB NOLOHH_08675 0.18 +0.5 1,676,783 + glgB NOLOHH_08675 0.18 +0.3 1,676,783 + glgB NOLOHH_08675 0.18 +0.4 1,676,784 - glgB NOLOHH_08675 0.18 -0.5 1,676,802 - glgB NOLOHH_08675 0.19 -0.8 1,676,858 + glgB NOLOHH_08675 0.21 -0.4 1,676,859 - glgB NOLOHH_08675 0.21 +1.1 1,676,859 - glgB NOLOHH_08675 0.21 +0.6 1,676,863 - glgB NOLOHH_08675 0.22 -1.2 1,676,897 + glgB NOLOHH_08675 0.23 +1.0 1,676,953 - glgB NOLOHH_08675 0.26 -1.2 1,676,953 - glgB NOLOHH_08675 0.26 -0.3 1,676,955 - glgB NOLOHH_08675 0.26 +1.5 1,676,955 - glgB NOLOHH_08675 0.26 +0.7 1,676,958 + glgB NOLOHH_08675 0.26 +0.9 1,676,958 + glgB NOLOHH_08675 0.26 -1.8 1,676,959 - glgB NOLOHH_08675 0.26 +1.1 1,676,959 - glgB NOLOHH_08675 0.26 -1.2 1,677,048 - glgB NOLOHH_08675 0.30 +1.5 1,677,048 - glgB NOLOHH_08675 0.30 -1.5 1,677,073 + glgB NOLOHH_08675 0.31 +0.1 1,677,073 + glgB NOLOHH_08675 0.31 -1.1 1,677,126 + glgB NOLOHH_08675 0.34 +0.7 1,677,127 - glgB NOLOHH_08675 0.34 -0.3 1,677,127 - glgB NOLOHH_08675 0.34 -1.8 1,677,213 + glgB NOLOHH_08675 0.38 -1.1 1,677,214 - glgB NOLOHH_08675 0.38 -0.5 1,677,218 + glgB NOLOHH_08675 0.38 -0.1 1,677,218 + glgB NOLOHH_08675 0.38 +0.5 1,677,219 - glgB NOLOHH_08675 0.38 -0.5 1,677,248 - glgB NOLOHH_08675 0.39 -0.5 1,677,307 - glgB NOLOHH_08675 0.42 +0.5 1,677,307 - glgB NOLOHH_08675 0.42 +2.1 1,677,349 - glgB NOLOHH_08675 0.44 -0.8 1,677,460 - glgB NOLOHH_08675 0.49 +1.2 1,677,486 + glgB NOLOHH_08675 0.50 -0.1 1,677,486 + glgB NOLOHH_08675 0.50 +0.1 1,677,487 - glgB NOLOHH_08675 0.50 +1.1 1,677,513 + glgB NOLOHH_08675 0.51 +0.5 1,677,513 + glgB NOLOHH_08675 0.51 -0.2 1,677,513 + glgB NOLOHH_08675 0.51 -0.2 1,677,513 + glgB NOLOHH_08675 0.51 +1.8 1,677,514 - glgB NOLOHH_08675 0.51 +0.1 1,677,514 - glgB NOLOHH_08675 0.51 -0.1 1,677,514 - glgB NOLOHH_08675 0.51 -0.2 1,677,519 + glgB NOLOHH_08675 0.52 -1.3 1,677,519 + glgB NOLOHH_08675 0.52 +0.8 1,677,519 + glgB NOLOHH_08675 0.52 +0.5 1,677,519 + glgB NOLOHH_08675 0.52 +1.1 1,677,520 - glgB NOLOHH_08675 0.52 +0.3 1,677,520 - glgB NOLOHH_08675 0.52 -0.1 1,677,520 - glgB NOLOHH_08675 0.52 -0.6 1,677,520 - glgB NOLOHH_08675 0.52 +0.6 1,677,520 - glgB NOLOHH_08675 0.52 -2.2 1,677,520 - glgB NOLOHH_08675 0.52 -1.9 1,677,520 - glgB NOLOHH_08675 0.52 -0.5 1,677,624 + glgB NOLOHH_08675 0.56 +0.3 1,677,633 + glgB NOLOHH_08675 0.57 +0.3 1,677,713 + glgB NOLOHH_08675 0.60 +0.5 1,677,713 + glgB NOLOHH_08675 0.60 +0.2 1,677,713 + glgB NOLOHH_08675 0.60 +0.7 1,677,713 + glgB NOLOHH_08675 0.60 -0.1 1,677,803 + glgB NOLOHH_08675 0.65 -0.7 1,677,826 - glgB NOLOHH_08675 0.66 +0.8 1,677,864 + glgB NOLOHH_08675 0.67 -0.8 1,677,864 + glgB NOLOHH_08675 0.67 -0.4 1,677,865 - glgB NOLOHH_08675 0.67 -0.5 1,677,865 - glgB NOLOHH_08675 0.67 +0.4 1,677,865 - glgB NOLOHH_08675 0.67 -0.9 1,677,894 + glgB NOLOHH_08675 0.69 +0.5 1,677,895 - glgB NOLOHH_08675 0.69 +0.6 1,677,927 + glgB NOLOHH_08675 0.70 -0.7 1,677,928 - glgB NOLOHH_08675 0.70 -0.2 1,677,928 - glgB NOLOHH_08675 0.70 -0.5 1,677,928 - glgB NOLOHH_08675 0.70 +0.1 1,677,934 - glgB NOLOHH_08675 0.71 -0.4 1,677,934 - glgB NOLOHH_08675 0.71 -0.2 1,678,048 - glgB NOLOHH_08675 0.76 +0.5 1,678,050 + glgB NOLOHH_08675 0.76 -0.4 1,678,050 + glgB NOLOHH_08675 0.76 -0.2 1,678,050 + glgB NOLOHH_08675 0.76 +0.7 1,678,051 - glgB NOLOHH_08675 0.76 +0.6 1,678,051 - glgB NOLOHH_08675 0.76 -0.8 1,678,051 - glgB NOLOHH_08675 0.76 +0.7 1,678,051 - glgB NOLOHH_08675 0.76 +2.0 1,678,219 - glgB NOLOHH_08675 0.84 -0.1 1,678,229 + glgB NOLOHH_08675 0.84 -0.2 1,678,229 + glgB NOLOHH_08675 0.84 +0.0 1,678,230 - glgB NOLOHH_08675 0.84 +1.1 1,678,326 - glgB NOLOHH_08675 0.88 -1.5 1,678,361 + -0.6 1,678,362 - +0.0 1,678,362 - -0.1 1,678,447 - +0.2 1,678,458 - -0.2 1,678,458 - -0.1 1,678,480 + -1.0 1,678,481 - -1.0 1,678,522 + -0.1 1,678,550 + +0.5 1,678,551 - -0.8 1,678,551 - -0.1 1,678,619 + +0.7 1,678,620 - -0.4 1,678,672 - +0.1 1,678,713 - -0.6 1,678,751 + -1.0 1,678,781 + glgX NOLOHH_08680 0.10 +0.8 1,678,885 + glgX NOLOHH_08680 0.16 -1.0 1,678,915 + glgX NOLOHH_08680 0.17 +0.2 1,678,915 + glgX NOLOHH_08680 0.17 -1.1 1,678,916 - glgX NOLOHH_08680 0.17 +0.7 1,678,916 - glgX NOLOHH_08680 0.17 +0.8 1,678,979 + glgX NOLOHH_08680 0.21 -0.1 1,678,980 - glgX NOLOHH_08680 0.21 +0.7 1,678,980 - glgX NOLOHH_08680 0.21 +1.0 1,679,034 - glgX NOLOHH_08680 0.23 -1.0 1,679,034 - glgX NOLOHH_08680 0.23 -1.1 1,679,060 + glgX NOLOHH_08680 0.25 -0.8 1,679,060 + glgX NOLOHH_08680 0.25 -1.3 1,679,061 - glgX NOLOHH_08680 0.25 -0.6 1,679,061 - glgX NOLOHH_08680 0.25 +0.7 1,679,061 - glgX NOLOHH_08680 0.25 +0.8 1,679,061 - glgX NOLOHH_08680 0.25 -1.1 1,679,099 + glgX NOLOHH_08680 0.27 -1.8 1,679,099 + glgX NOLOHH_08680 0.27 -0.5 1,679,100 - glgX NOLOHH_08680 0.27 +0.4 1,679,100 - glgX NOLOHH_08680 0.27 -1.5 1,679,100 - glgX NOLOHH_08680 0.27 -0.1 1,679,101 + glgX NOLOHH_08680 0.27 -0.9 1,679,101 + glgX NOLOHH_08680 0.27 +0.3 1,679,102 - glgX NOLOHH_08680 0.27 +0.5 1,679,102 - glgX NOLOHH_08680 0.27 -0.7 1,679,217 + glgX NOLOHH_08680 0.33 +0.5 1,679,217 + glgX NOLOHH_08680 0.33 +0.0 1,679,217 + glgX NOLOHH_08680 0.33 +0.3 1,679,217 + glgX NOLOHH_08680 0.33 -0.1 1,679,221 + glgX NOLOHH_08680 0.33 -1.8 1,679,221 + glgX NOLOHH_08680 0.33 +0.0 1,679,221 + glgX NOLOHH_08680 0.33 -0.3 1,679,221 + glgX NOLOHH_08680 0.33 -1.5 1,679,221 + glgX NOLOHH_08680 0.33 -0.1 1,679,222 - glgX NOLOHH_08680 0.33 +1.0 1,679,226 - glgX NOLOHH_08680 0.33 +0.5 1,679,271 - glgX NOLOHH_08680 0.35 +0.0 1,679,329 + glgX NOLOHH_08680 0.38 -0.1 1,679,330 - glgX NOLOHH_08680 0.38 -1.1 1,679,371 + glgX NOLOHH_08680 0.40 -1.5 1,679,371 + glgX NOLOHH_08680 0.40 +0.4 1,679,372 - glgX NOLOHH_08680 0.40 +0.0 1,679,372 - glgX NOLOHH_08680 0.40 -1.5 1,679,428 + glgX NOLOHH_08680 0.43 -0.2 1,679,428 + glgX NOLOHH_08680 0.43 +0.1 1,679,432 + glgX NOLOHH_08680 0.43 -1.0 1,679,432 + glgX NOLOHH_08680 0.43 +0.2 1,679,432 + glgX NOLOHH_08680 0.43 -0.1 1,679,432 + glgX NOLOHH_08680 0.43 +0.3 1,679,432 + glgX NOLOHH_08680 0.43 +0.5 1,679,433 - glgX NOLOHH_08680 0.44 -0.3 1,679,433 - glgX NOLOHH_08680 0.44 -0.2 1,679,435 + glgX NOLOHH_08680 0.44 -0.3 1,679,435 + glgX NOLOHH_08680 0.44 -0.3 1,679,519 + glgX NOLOHH_08680 0.48 +0.5 1,679,547 + glgX NOLOHH_08680 0.49 +0.3
Or see this region's nucleotide sequence