Strain Fitness in Escherichia coli ECOR27 around NOLOHH_08430

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
1,628,470	+	nikE	NOLOHH_08420	0.55	-0.9
1,628,470	+	nikE	NOLOHH_08420	0.55	+0.8
1,628,470	+	nikE	NOLOHH_08420	0.55	-0.3
1,628,470	+	nikE	NOLOHH_08420	0.55	-0.6
1,628,471	-	nikE	NOLOHH_08420	0.56	-0.8
1,628,471	-	nikE	NOLOHH_08420	0.56	-0.2
1,628,471	-	nikE	NOLOHH_08420	0.56	-0.4
1,628,471	-	nikE	NOLOHH_08420	0.56	-0.8
1,628,476	+	nikE	NOLOHH_08420	0.57	+1.8
1,628,476	+	nikE	NOLOHH_08420	0.57	-0.6
1,628,477	-	nikE	NOLOHH_08420	0.57	-0.8
1,628,477	-	nikE	NOLOHH_08420	0.57	-0.5
1,628,477	-	nikE	NOLOHH_08420	0.57	-0.2
1,628,477	-	nikE	NOLOHH_08420	0.57	-0.2
1,628,477	-	nikE	NOLOHH_08420	0.57	-0.8
1,628,573	+	nikE	NOLOHH_08420	0.81	-0.1
1,628,574	-	nikE	NOLOHH_08420	0.81	+0.1
1,628,574	-	nikE	NOLOHH_08420	0.81	+0.2
1,628,614	-				+0.0
1,628,699	+				-0.9
1,628,741	+	nikE	NOLOHH_08425	0.11	+0.5
1,628,825	+	nikE	NOLOHH_08425	0.21	-1.4
1,628,825	+	nikE	NOLOHH_08425	0.21	+1.2
1,628,825	+	nikE	NOLOHH_08425	0.21	+0.3
1,628,826	-	nikE	NOLOHH_08425	0.21	+1.0
1,628,870	+	nikE	NOLOHH_08425	0.27	-0.3
1,628,870	+	nikE	NOLOHH_08425	0.27	+1.1
1,628,871	-	nikE	NOLOHH_08425	0.27	-0.5
1,628,871	-	nikE	NOLOHH_08425	0.27	+0.1
1,628,871	-	nikE	NOLOHH_08425	0.27	-0.7
1,628,920	+	nikE	NOLOHH_08425	0.33	+0.2
1,628,945	+	nikE	NOLOHH_08425	0.36	+0.4
1,628,945	+	nikE	NOLOHH_08425	0.36	-2.7
1,628,945	+	nikE	NOLOHH_08425	0.36	+0.1
1,629,101	+	nikE	NOLOHH_08425	0.55	-0.5
1,629,102	-	nikE	NOLOHH_08425	0.56	-1.0
1,629,179	+	nikE	NOLOHH_08425	0.65	-1.0
1,629,179	+	nikE	NOLOHH_08425	0.65	-0.5
1,629,179	+	nikE	NOLOHH_08425	0.65	-0.8
1,629,180	-	nikE	NOLOHH_08425	0.65	-1.0
1,629,180	-	nikE	NOLOHH_08425	0.65	-0.4
1,629,208	+	nikE	NOLOHH_08425	0.69	-0.8
1,629,208	+	nikE	NOLOHH_08425	0.69	-0.1
1,629,253	+	nikE	NOLOHH_08425	0.74	-0.6
1,629,253	+	nikE	NOLOHH_08425	0.74	-0.7
1,629,253	+	nikE	NOLOHH_08425	0.74	-0.3
1,629,254	-	nikE	NOLOHH_08425	0.74	+0.8
1,629,256	+	nikE	NOLOHH_08425	0.75	+0.0
1,629,256	+	nikE	NOLOHH_08425	0.75	-0.1
1,629,256	+	nikE	NOLOHH_08425	0.75	-0.2
1,629,256	+	nikE	NOLOHH_08425	0.75	-1.8
1,629,278	+	nikE	NOLOHH_08425	0.77	+0.2
1,629,278	+	nikE	NOLOHH_08425	0.77	-0.5
1,629,279	-	nikE	NOLOHH_08425	0.77	+0.3
1,629,424	-				+1.0
1,629,448	+				-0.3
1,629,448	+				+0.2
1,629,448	+				-0.3
1,629,449	-				+1.5
1,629,449	-				+0.5
1,629,452	+				-0.0
1,629,452	+				+0.5
1,629,453	-				-1.8
1,629,453	-				-0.2
1,629,480	-				-0.2
1,629,520	-				-0.8
1,629,520	-				+0.2
1,629,548	-	nikD	NOLOHH_08430	0.12	-0.0
1,629,548	-	nikD	NOLOHH_08430	0.12	+0.5
1,629,700	+	nikD	NOLOHH_08430	0.32	-1.5
1,629,738	+	nikD	NOLOHH_08430	0.37	-2.5
1,629,856	+	nikD	NOLOHH_08430	0.52	-1.5
1,629,857	-	nikD	NOLOHH_08430	0.52	+0.3
1,629,857	-	nikD	NOLOHH_08430	0.52	+0.1
1,629,857	-	nikD	NOLOHH_08430	0.52	+0.3
1,630,156	+				+0.6
1,630,165	+				-0.3
1,630,187	-				+0.4
1,630,197	+				+0.6
1,630,197	+				-0.9
1,630,197	+				-1.0
1,630,197	+				-0.8
1,630,197	+				-0.1
1,630,198	-				+0.5
1,630,198	-				-0.6
1,630,198	-				-0.3
1,630,198	-				+0.2
1,630,198	-				+0.3
1,630,198	-				+0.8
1,630,202	-				-0.5
1,630,202	-				+0.3
1,630,223	-				-2.0
1,630,223	-				-0.6
1,630,287	-				-1.8
1,630,304	+				+0.5
1,630,304	+				+0.1
1,630,352	+	nikC	NOLOHH_08435	0.16	+1.0
1,630,352	+	nikC	NOLOHH_08435	0.16	+1.8
1,630,352	+	nikC	NOLOHH_08435	0.16	+0.0
1,630,352	+	nikC	NOLOHH_08435	0.16	+1.5
1,630,352	+	nikC	NOLOHH_08435	0.16	+0.1
1,630,352	+	nikC	NOLOHH_08435	0.16	+1.2
1,630,353	-	nikC	NOLOHH_08435	0.16	-0.5
1,630,353	-	nikC	NOLOHH_08435	0.16	+1.5
1,630,353	-	nikC	NOLOHH_08435	0.16	+0.0
1,630,353	-	nikC	NOLOHH_08435	0.16	-0.5
1,630,353	-	nikC	NOLOHH_08435	0.16	+0.4
1,630,353	-	nikC	NOLOHH_08435	0.16	-0.6
1,630,353	-	nikC	NOLOHH_08435	0.16	+0.3
1,630,354	+	nikC	NOLOHH_08435	0.16	-0.1
1,630,354	+	nikC	NOLOHH_08435	0.16	-0.1
1,630,354	+	nikC	NOLOHH_08435	0.16	+0.0
1,630,354	+	nikC	NOLOHH_08435	0.16	+0.5
1,630,354	+	nikC	NOLOHH_08435	0.16	-0.8
1,630,354	+	nikC	NOLOHH_08435	0.16	-0.3
1,630,354	+	nikC	NOLOHH_08435	0.16	+0.5
1,630,354	+	nikC	NOLOHH_08435	0.16	+0.4
1,630,355	-	nikC	NOLOHH_08435	0.16	-0.3
1,630,355	-	nikC	NOLOHH_08435	0.16	+0.5
1,630,355	-	nikC	NOLOHH_08435	0.16	+0.3
1,630,449	-	nikC	NOLOHH_08435	0.27	-0.2
1,630,449	-	nikC	NOLOHH_08435	0.27	-0.0
1,630,644	+	nikC	NOLOHH_08435	0.51	+0.3
1,630,644	+	nikC	NOLOHH_08435	0.51	+0.8
1,630,644	+	nikC	NOLOHH_08435	0.51	+0.5
1,630,644	+	nikC	NOLOHH_08435	0.51	-1.3
1,630,644	+	nikC	NOLOHH_08435	0.51	-0.3
1,630,644	+	nikC	NOLOHH_08435	0.51	-0.5
1,630,645	-	nikC	NOLOHH_08435	0.51	+0.0
1,630,645	-	nikC	NOLOHH_08435	0.51	+0.3
1,630,645	-	nikC	NOLOHH_08435	0.51	-0.1
1,630,645	-	nikC	NOLOHH_08435	0.51	-0.5
1,630,680	-	nikC	NOLOHH_08435	0.55	-0.3
1,630,712	+	nikC	NOLOHH_08435	0.59	+1.5
1,630,712	+	nikC	NOLOHH_08435	0.59	-0.5
1,630,712	+	nikC	NOLOHH_08435	0.59	+1.2
1,630,713	-	nikC	NOLOHH_08435	0.59	+0.7
1,630,879	-	nikC	NOLOHH_08435	0.79	+0.5
1,630,940	+	nikC	NOLOHH_08435	0.86	-0.9
1,631,123	-				+0.4
1,631,155	+	nikB	NOLOHH_08440	0.11	-0.2
1,631,155	+	nikB	NOLOHH_08440	0.11	+0.9
1,631,156	-	nikB	NOLOHH_08440	0.11	-0.5
1,631,156	-	nikB	NOLOHH_08440	0.11	+0.0
1,631,156	-	nikB	NOLOHH_08440	0.11	-1.2
1,631,176	-	nikB	NOLOHH_08440	0.13	-0.8