Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnaB and tnaA are separated by 90 nucleotides tnaA and tnaC are separated by 220 nucleotides tnaC and NOLOHH_07125 are separated by 242 nucleotides
NOLOHH_07110: tnaB - low affinity tryptophan permease TnaB, at 1,348,270 to 1,349,517
tnaB
NOLOHH_07115: tnaA - tryptophanase, at 1,349,608 to 1,351,023
tnaA
NOLOHH_07120: tnaC - tryptophanase leader peptide, at 1,351,244 to 1,351,318
tnaC
NOLOHH_07125: NOLOHH_07125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,351,561 to 1,352,925
_07125
Position (kb) 1349
1350
1351
1352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1348.639 kb on + strand, within tnaB at 1348.639 kb on + strand, within tnaB at 1348.639 kb on + strand, within tnaB at 1348.639 kb on + strand, within tnaB at 1348.639 kb on + strand, within tnaB at 1348.639 kb on + strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.640 kb on - strand, within tnaB at 1348.645 kb on - strand, within tnaB at 1348.782 kb on - strand, within tnaB at 1348.782 kb on - strand, within tnaB at 1348.796 kb on + strand, within tnaB at 1348.797 kb on - strand, within tnaB at 1348.840 kb on + strand, within tnaB at 1348.841 kb on - strand, within tnaB at 1348.845 kb on + strand, within tnaB at 1348.845 kb on + strand, within tnaB at 1348.845 kb on + strand, within tnaB at 1348.845 kb on + strand, within tnaB at 1348.846 kb on - strand, within tnaB at 1348.846 kb on - strand, within tnaB at 1348.935 kb on + strand, within tnaB at 1348.935 kb on + strand, within tnaB at 1348.935 kb on + strand, within tnaB at 1348.935 kb on + strand, within tnaB at 1348.936 kb on - strand, within tnaB at 1348.936 kb on - strand, within tnaB at 1348.937 kb on + strand, within tnaB at 1348.938 kb on - strand, within tnaB at 1348.946 kb on + strand, within tnaB at 1348.946 kb on + strand, within tnaB at 1348.946 kb on + strand, within tnaB at 1348.946 kb on + strand, within tnaB at 1348.947 kb on - strand, within tnaB at 1348.947 kb on - strand, within tnaB at 1349.089 kb on + strand, within tnaB at 1349.089 kb on + strand, within tnaB at 1349.090 kb on - strand, within tnaB at 1349.098 kb on + strand, within tnaB at 1349.136 kb on + strand, within tnaB at 1349.136 kb on + strand, within tnaB at 1349.136 kb on + strand, within tnaB at 1349.136 kb on + strand, within tnaB at 1349.137 kb on - strand, within tnaB at 1349.182 kb on - strand, within tnaB at 1349.207 kb on + strand, within tnaB at 1349.207 kb on + strand, within tnaB at 1349.207 kb on + strand, within tnaB at 1349.207 kb on + strand, within tnaB at 1349.213 kb on + strand, within tnaB at 1349.213 kb on + strand, within tnaB at 1349.213 kb on + strand, within tnaB at 1349.214 kb on - strand, within tnaB at 1349.214 kb on - strand, within tnaB at 1349.214 kb on - strand, within tnaB at 1349.226 kb on - strand, within tnaB at 1349.428 kb on + strand at 1349.428 kb on + strand at 1349.428 kb on + strand at 1349.439 kb on + strand at 1349.440 kb on - strand at 1349.440 kb on - strand at 1349.452 kb on + strand at 1349.452 kb on + strand at 1349.464 kb on + strand at 1349.466 kb on + strand at 1349.472 kb on + strand at 1349.540 kb on + strand at 1349.560 kb on + strand at 1349.560 kb on + strand at 1349.561 kb on - strand at 1349.589 kb on - strand at 1349.589 kb on - strand at 1349.599 kb on + strand at 1349.602 kb on + strand at 1349.605 kb on + strand at 1349.610 kb on - strand at 1349.645 kb on - strand at 1349.645 kb on - strand at 1349.658 kb on - strand at 1349.718 kb on + strand at 1349.730 kb on + strand at 1349.730 kb on + strand at 1349.730 kb on + strand at 1349.731 kb on - strand at 1349.731 kb on - strand at 1349.742 kb on + strand at 1349.743 kb on - strand at 1349.744 kb on + strand at 1349.744 kb on + strand at 1349.744 kb on + strand at 1349.744 kb on + strand at 1349.744 kb on + strand at 1349.745 kb on - strand at 1349.745 kb on - strand at 1349.745 kb on - strand at 1349.866 kb on - strand, within tnaA at 1349.866 kb on - strand, within tnaA at 1349.868 kb on - strand, within tnaA at 1350.005 kb on + strand, within tnaA at 1350.005 kb on + strand, within tnaA at 1350.006 kb on - strand, within tnaA at 1350.006 kb on - strand, within tnaA at 1350.011 kb on - strand, within tnaA at 1350.056 kb on + strand, within tnaA at 1350.056 kb on + strand, within tnaA at 1350.057 kb on - strand, within tnaA at 1350.064 kb on + strand, within tnaA at 1350.065 kb on - strand, within tnaA at 1350.104 kb on + strand, within tnaA at 1350.104 kb on + strand, within tnaA at 1350.104 kb on + strand, within tnaA at 1350.105 kb on - strand, within tnaA at 1350.152 kb on + strand, within tnaA at 1350.152 kb on + strand, within tnaA at 1350.153 kb on - strand, within tnaA at 1350.153 kb on - strand, within tnaA at 1350.153 kb on - strand, within tnaA at 1350.237 kb on + strand, within tnaA at 1350.238 kb on - strand, within tnaA at 1350.245 kb on + strand, within tnaA at 1350.245 kb on + strand, within tnaA at 1350.251 kb on + strand, within tnaA at 1350.252 kb on - strand, within tnaA at 1350.290 kb on + strand, within tnaA at 1350.360 kb on + strand, within tnaA at 1350.383 kb on + strand, within tnaA at 1350.383 kb on + strand, within tnaA at 1350.383 kb on + strand, within tnaA at 1350.383 kb on + strand, within tnaA at 1350.384 kb on - strand, within tnaA at 1350.384 kb on - strand, within tnaA at 1350.394 kb on + strand, within tnaA at 1350.432 kb on + strand, within tnaA at 1350.433 kb on - strand, within tnaA at 1350.433 kb on - strand, within tnaA at 1350.455 kb on + strand, within tnaA at 1350.455 kb on + strand, within tnaA at 1350.456 kb on - strand, within tnaA at 1350.496 kb on + strand, within tnaA at 1350.497 kb on - strand, within tnaA at 1350.497 kb on - strand, within tnaA at 1350.517 kb on - strand, within tnaA at 1350.517 kb on - strand, within tnaA at 1350.563 kb on + strand, within tnaA at 1350.563 kb on + strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.564 kb on - strand, within tnaA at 1350.571 kb on - strand, within tnaA at 1350.623 kb on + strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.624 kb on - strand, within tnaA at 1350.696 kb on + strand, within tnaA at 1350.696 kb on + strand, within tnaA at 1350.699 kb on - strand, within tnaA at 1350.699 kb on - strand, within tnaA at 1350.782 kb on + strand, within tnaA at 1350.783 kb on - strand, within tnaA at 1350.785 kb on + strand, within tnaA at 1350.785 kb on + strand, within tnaA at 1350.786 kb on - strand, within tnaA at 1350.786 kb on - strand, within tnaA at 1350.803 kb on + strand, within tnaA at 1350.837 kb on + strand, within tnaA at 1350.837 kb on + strand, within tnaA at 1350.838 kb on - strand, within tnaA at 1350.838 kb on - strand, within tnaA at 1350.875 kb on - strand, within tnaA at 1350.957 kb on + strand at 1350.957 kb on + strand at 1350.958 kb on - strand at 1350.960 kb on + strand at 1350.960 kb on + strand at 1351.046 kb on - strand at 1351.049 kb on + strand at 1351.101 kb on - strand at 1351.103 kb on - strand at 1351.103 kb on - strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.104 kb on + strand at 1351.186 kb on + strand at 1351.230 kb on + strand at 1351.268 kb on - strand, within tnaC at 1351.301 kb on + strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.302 kb on - strand, within tnaC at 1351.303 kb on + strand, within tnaC at 1351.303 kb on + strand, within tnaC at 1351.304 kb on - strand, within tnaC at 1351.304 kb on - strand, within tnaC at 1351.307 kb on + strand, within tnaC at 1351.308 kb on - strand, within tnaC at 1351.308 kb on - strand, within tnaC at 1351.349 kb on - strand at 1351.354 kb on - strand at 1351.356 kb on - strand at 1351.356 kb on - strand at 1351.358 kb on + strand at 1351.359 kb on - strand at 1351.429 kb on + strand at 1351.552 kb on + strand at 1351.566 kb on + strand at 1351.567 kb on - strand at 1351.693 kb on + strand at 1351.747 kb on + strand, within NOLOHH_07125 at 1351.748 kb on - strand, within NOLOHH_07125 at 1351.920 kb on + strand, within NOLOHH_07125
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,348,639 + tnaB NOLOHH_07110 0.30 +0.6 1,348,639 + tnaB NOLOHH_07110 0.30 -0.4 1,348,639 + tnaB NOLOHH_07110 0.30 -0.5 1,348,639 + tnaB NOLOHH_07110 0.30 -0.4 1,348,639 + tnaB NOLOHH_07110 0.30 +0.2 1,348,639 + tnaB NOLOHH_07110 0.30 -0.0 1,348,640 - tnaB NOLOHH_07110 0.30 +0.1 1,348,640 - tnaB NOLOHH_07110 0.30 -0.0 1,348,640 - tnaB NOLOHH_07110 0.30 -1.0 1,348,640 - tnaB NOLOHH_07110 0.30 +0.1 1,348,640 - tnaB NOLOHH_07110 0.30 -0.4 1,348,640 - tnaB NOLOHH_07110 0.30 -0.4 1,348,640 - tnaB NOLOHH_07110 0.30 +0.6 1,348,640 - tnaB NOLOHH_07110 0.30 +0.3 1,348,640 - tnaB NOLOHH_07110 0.30 -0.1 1,348,645 - tnaB NOLOHH_07110 0.30 -1.4 1,348,782 - tnaB NOLOHH_07110 0.41 -0.0 1,348,782 - tnaB NOLOHH_07110 0.41 +0.6 1,348,796 + tnaB NOLOHH_07110 0.42 +0.4 1,348,797 - tnaB NOLOHH_07110 0.42 -0.2 1,348,840 + tnaB NOLOHH_07110 0.46 -0.3 1,348,841 - tnaB NOLOHH_07110 0.46 +0.8 1,348,845 + tnaB NOLOHH_07110 0.46 +0.3 1,348,845 + tnaB NOLOHH_07110 0.46 +0.9 1,348,845 + tnaB NOLOHH_07110 0.46 +0.7 1,348,845 + tnaB NOLOHH_07110 0.46 -0.3 1,348,846 - tnaB NOLOHH_07110 0.46 +0.4 1,348,846 - tnaB NOLOHH_07110 0.46 -0.5 1,348,935 + tnaB NOLOHH_07110 0.53 +0.8 1,348,935 + tnaB NOLOHH_07110 0.53 -0.3 1,348,935 + tnaB NOLOHH_07110 0.53 -0.7 1,348,935 + tnaB NOLOHH_07110 0.53 -0.3 1,348,936 - tnaB NOLOHH_07110 0.53 -1.0 1,348,936 - tnaB NOLOHH_07110 0.53 +0.8 1,348,937 + tnaB NOLOHH_07110 0.53 +0.3 1,348,938 - tnaB NOLOHH_07110 0.54 -0.4 1,348,946 + tnaB NOLOHH_07110 0.54 +0.4 1,348,946 + tnaB NOLOHH_07110 0.54 -1.7 1,348,946 + tnaB NOLOHH_07110 0.54 -0.7 1,348,946 + tnaB NOLOHH_07110 0.54 -1.5 1,348,947 - tnaB NOLOHH_07110 0.54 -0.8 1,348,947 - tnaB NOLOHH_07110 0.54 -0.2 1,349,089 + tnaB NOLOHH_07110 0.66 -0.7 1,349,089 + tnaB NOLOHH_07110 0.66 +0.9 1,349,090 - tnaB NOLOHH_07110 0.66 -0.8 1,349,098 + tnaB NOLOHH_07110 0.66 +0.6 1,349,136 + tnaB NOLOHH_07110 0.69 +0.3 1,349,136 + tnaB NOLOHH_07110 0.69 -0.2 1,349,136 + tnaB NOLOHH_07110 0.69 -0.3 1,349,136 + tnaB NOLOHH_07110 0.69 -0.6 1,349,137 - tnaB NOLOHH_07110 0.69 -0.5 1,349,182 - tnaB NOLOHH_07110 0.73 +0.6 1,349,207 + tnaB NOLOHH_07110 0.75 +0.2 1,349,207 + tnaB NOLOHH_07110 0.75 -0.9 1,349,207 + tnaB NOLOHH_07110 0.75 +0.1 1,349,207 + tnaB NOLOHH_07110 0.75 +0.3 1,349,213 + tnaB NOLOHH_07110 0.76 -0.2 1,349,213 + tnaB NOLOHH_07110 0.76 +0.7 1,349,213 + tnaB NOLOHH_07110 0.76 +0.6 1,349,214 - tnaB NOLOHH_07110 0.76 -0.0 1,349,214 - tnaB NOLOHH_07110 0.76 +1.7 1,349,214 - tnaB NOLOHH_07110 0.76 -0.2 1,349,226 - tnaB NOLOHH_07110 0.77 -0.2 1,349,428 + +1.2 1,349,428 + +0.3 1,349,428 + -0.2 1,349,439 + -2.0 1,349,440 - +0.3 1,349,440 - -1.4 1,349,452 + -0.9 1,349,452 + -0.6 1,349,464 + -1.0 1,349,466 + +0.2 1,349,472 + -0.8 1,349,540 + -0.3 1,349,560 + -0.1 1,349,560 + -0.3 1,349,561 - +0.6 1,349,589 - -0.2 1,349,589 - +0.4 1,349,599 + +0.9 1,349,602 + +0.4 1,349,605 + +0.3 1,349,610 - +0.0 1,349,645 - -0.4 1,349,645 - +1.0 1,349,658 - -0.4 1,349,718 + +0.9 1,349,730 + +0.2 1,349,730 + -0.4 1,349,730 + -0.3 1,349,731 - -2.9 1,349,731 - -0.1 1,349,742 + -1.0 1,349,743 - -1.0 1,349,744 + -0.4 1,349,744 + +0.9 1,349,744 + +1.8 1,349,744 + +3.9 1,349,744 + +0.1 1,349,745 - +0.2 1,349,745 - +0.7 1,349,745 - +0.6 1,349,866 - tnaA NOLOHH_07115 0.18 -0.2 1,349,866 - tnaA NOLOHH_07115 0.18 +1.0 1,349,868 - tnaA NOLOHH_07115 0.18 -1.0 1,350,005 + tnaA NOLOHH_07115 0.28 -1.5 1,350,005 + tnaA NOLOHH_07115 0.28 +0.5 1,350,006 - tnaA NOLOHH_07115 0.28 -0.3 1,350,006 - tnaA NOLOHH_07115 0.28 -0.7 1,350,011 - tnaA NOLOHH_07115 0.28 +0.6 1,350,056 + tnaA NOLOHH_07115 0.32 +0.8 1,350,056 + tnaA NOLOHH_07115 0.32 -0.2 1,350,057 - tnaA NOLOHH_07115 0.32 +0.1 1,350,064 + tnaA NOLOHH_07115 0.32 +0.3 1,350,065 - tnaA NOLOHH_07115 0.32 +0.1 1,350,104 + tnaA NOLOHH_07115 0.35 -0.6 1,350,104 + tnaA NOLOHH_07115 0.35 -1.4 1,350,104 + tnaA NOLOHH_07115 0.35 +0.1 1,350,105 - tnaA NOLOHH_07115 0.35 -1.4 1,350,152 + tnaA NOLOHH_07115 0.38 -0.6 1,350,152 + tnaA NOLOHH_07115 0.38 -0.4 1,350,153 - tnaA NOLOHH_07115 0.38 +0.2 1,350,153 - tnaA NOLOHH_07115 0.38 +0.6 1,350,153 - tnaA NOLOHH_07115 0.38 -0.1 1,350,237 + tnaA NOLOHH_07115 0.44 -0.7 1,350,238 - tnaA NOLOHH_07115 0.44 +0.6 1,350,245 + tnaA NOLOHH_07115 0.45 +0.2 1,350,245 + tnaA NOLOHH_07115 0.45 -0.4 1,350,251 + tnaA NOLOHH_07115 0.45 -0.2 1,350,252 - tnaA NOLOHH_07115 0.45 +0.0 1,350,290 + tnaA NOLOHH_07115 0.48 +0.1 1,350,360 + tnaA NOLOHH_07115 0.53 -0.2 1,350,383 + tnaA NOLOHH_07115 0.55 -0.4 1,350,383 + tnaA NOLOHH_07115 0.55 +1.2 1,350,383 + tnaA NOLOHH_07115 0.55 +0.7 1,350,383 + tnaA NOLOHH_07115 0.55 -0.1 1,350,384 - tnaA NOLOHH_07115 0.55 -1.0 1,350,384 - tnaA NOLOHH_07115 0.55 -0.4 1,350,394 + tnaA NOLOHH_07115 0.56 +0.1 1,350,432 + tnaA NOLOHH_07115 0.58 -0.9 1,350,433 - tnaA NOLOHH_07115 0.58 +0.9 1,350,433 - tnaA NOLOHH_07115 0.58 +0.5 1,350,455 + tnaA NOLOHH_07115 0.60 +0.5 1,350,455 + tnaA NOLOHH_07115 0.60 +0.4 1,350,456 - tnaA NOLOHH_07115 0.60 +0.4 1,350,496 + tnaA NOLOHH_07115 0.63 +0.4 1,350,497 - tnaA NOLOHH_07115 0.63 +0.6 1,350,497 - tnaA NOLOHH_07115 0.63 -0.2 1,350,517 - tnaA NOLOHH_07115 0.64 +1.7 1,350,517 - tnaA NOLOHH_07115 0.64 -0.1 1,350,563 + tnaA NOLOHH_07115 0.67 +0.4 1,350,563 + tnaA NOLOHH_07115 0.67 -0.4 1,350,564 - tnaA NOLOHH_07115 0.68 -0.8 1,350,564 - tnaA NOLOHH_07115 0.68 +0.3 1,350,564 - tnaA NOLOHH_07115 0.68 +0.5 1,350,571 - tnaA NOLOHH_07115 0.68 +0.0 1,350,623 + tnaA NOLOHH_07115 0.72 +1.6 1,350,624 - tnaA NOLOHH_07115 0.72 +1.6 1,350,624 - tnaA NOLOHH_07115 0.72 -1.2 1,350,624 - tnaA NOLOHH_07115 0.72 +0.4 1,350,624 - tnaA NOLOHH_07115 0.72 -2.0 1,350,624 - tnaA NOLOHH_07115 0.72 -0.2 1,350,624 - tnaA NOLOHH_07115 0.72 -0.4 1,350,696 + tnaA NOLOHH_07115 0.77 +0.8 1,350,696 + tnaA NOLOHH_07115 0.77 -2.7 1,350,699 - tnaA NOLOHH_07115 0.77 +1.0 1,350,699 - tnaA NOLOHH_07115 0.77 +0.8 1,350,782 + tnaA NOLOHH_07115 0.83 -0.6 1,350,783 - tnaA NOLOHH_07115 0.83 +0.3 1,350,785 + tnaA NOLOHH_07115 0.83 -1.1 1,350,785 + tnaA NOLOHH_07115 0.83 +0.4 1,350,786 - tnaA NOLOHH_07115 0.83 -0.1 1,350,786 - tnaA NOLOHH_07115 0.83 +1.0 1,350,803 + tnaA NOLOHH_07115 0.84 +0.4 1,350,837 + tnaA NOLOHH_07115 0.87 -0.0 1,350,837 + tnaA NOLOHH_07115 0.87 -0.2 1,350,838 - tnaA NOLOHH_07115 0.87 -0.7 1,350,838 - tnaA NOLOHH_07115 0.87 -0.4 1,350,875 - tnaA NOLOHH_07115 0.89 -0.3 1,350,957 + -0.2 1,350,957 + +1.3 1,350,958 - +1.6 1,350,960 + -0.4 1,350,960 + +0.4 1,351,046 - +2.3 1,351,049 + +0.4 1,351,101 - -0.2 1,351,103 - -0.6 1,351,103 - +0.6 1,351,104 + +0.2 1,351,104 + -0.9 1,351,104 + +1.2 1,351,104 + +0.1 1,351,186 + +0.8 1,351,230 + +0.3 1,351,268 - tnaC NOLOHH_07120 0.32 -1.0 1,351,301 + tnaC NOLOHH_07120 0.76 +0.1 1,351,302 - tnaC NOLOHH_07120 0.77 +0.1 1,351,302 - tnaC NOLOHH_07120 0.77 -0.6 1,351,302 - tnaC NOLOHH_07120 0.77 +0.4 1,351,302 - tnaC NOLOHH_07120 0.77 -1.0 1,351,302 - tnaC NOLOHH_07120 0.77 -0.2 1,351,302 - tnaC NOLOHH_07120 0.77 +0.8 1,351,303 + tnaC NOLOHH_07120 0.79 -0.7 1,351,303 + tnaC NOLOHH_07120 0.79 -0.7 1,351,304 - tnaC NOLOHH_07120 0.80 +0.5 1,351,304 - tnaC NOLOHH_07120 0.80 +0.2 1,351,307 + tnaC NOLOHH_07120 0.84 -0.1 1,351,308 - tnaC NOLOHH_07120 0.85 +0.7 1,351,308 - tnaC NOLOHH_07120 0.85 +0.4 1,351,349 - -0.6 1,351,354 - -0.2 1,351,356 - -0.6 1,351,356 - +0.8 1,351,358 + +0.4 1,351,359 - -1.0 1,351,429 + +0.2 1,351,552 + -0.1 1,351,566 + +0.6 1,351,567 - -1.4 1,351,693 + +0.6 1,351,747 + NOLOHH_07125 0.14 -1.7 1,351,748 - NOLOHH_07125 0.14 -1.4 1,351,920 + NOLOHH_07125 0.26 -1.0
Or see this region's nucleotide sequence