Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proP and NOLOHH_04860 are separated by 263 nucleotides NOLOHH_04860 and crfC overlap by 4 nucleotides
NOLOHH_04855: proP - glycine betaine/L-proline transporter ProP, at 887,619 to 889,121
proP
NOLOHH_04860: NOLOHH_04860 - YjcZ-like protein, at 889,385 to 890,263
_04860
NOLOHH_04865: crfC - clamp-binding protein CrfC, at 890,260 to 892,488
crfC
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 888.568 kb on - strand, within proP at 888.576 kb on + strand, within proP at 888.605 kb on + strand, within proP at 888.606 kb on - strand, within proP at 888.606 kb on - strand, within proP at 888.606 kb on - strand, within proP at 888.606 kb on - strand, within proP at 888.633 kb on - strand, within proP at 888.686 kb on + strand, within proP at 888.687 kb on - strand, within proP at 888.688 kb on + strand, within proP at 888.688 kb on + strand, within proP at 888.688 kb on + strand, within proP at 888.689 kb on - strand, within proP at 888.689 kb on - strand, within proP at 888.689 kb on - strand, within proP at 888.722 kb on + strand, within proP at 888.723 kb on - strand, within proP at 888.753 kb on - strand, within proP at 888.753 kb on - strand, within proP at 888.767 kb on - strand, within proP at 888.806 kb on + strand, within proP at 888.806 kb on + strand, within proP at 888.807 kb on - strand, within proP at 888.807 kb on - strand, within proP at 888.807 kb on - strand, within proP at 888.815 kb on + strand, within proP at 888.816 kb on - strand, within proP at 888.816 kb on - strand, within proP at 888.816 kb on - strand, within proP at 888.844 kb on + strand, within proP at 888.844 kb on + strand, within proP at 888.844 kb on + strand, within proP at 888.844 kb on + strand, within proP at 888.845 kb on - strand, within proP at 888.845 kb on - strand, within proP at 888.845 kb on - strand, within proP at 888.845 kb on - strand, within proP at 888.845 kb on - strand, within proP at 888.860 kb on + strand, within proP at 888.861 kb on - strand, within proP at 888.861 kb on - strand, within proP at 888.861 kb on - strand, within proP at 888.861 kb on - strand, within proP at 888.965 kb on + strand, within proP at 888.969 kb on + strand, within proP at 888.970 kb on - strand, within proP at 888.970 kb on - strand, within proP at 888.976 kb on + strand at 888.977 kb on - strand at 888.991 kb on + strand at 888.991 kb on + strand at 888.992 kb on - strand at 888.992 kb on - strand at 889.071 kb on - strand at 889.121 kb on + strand at 889.121 kb on + strand at 889.122 kb on - strand at 889.122 kb on - strand at 889.218 kb on + strand at 889.240 kb on + strand at 889.240 kb on + strand at 889.241 kb on - strand at 889.241 kb on - strand at 889.241 kb on - strand at 889.241 kb on - strand at 889.263 kb on - strand at 889.263 kb on - strand at 889.325 kb on - strand at 889.383 kb on - strand at 889.386 kb on + strand at 889.513 kb on + strand, within NOLOHH_04860 at 889.513 kb on + strand, within NOLOHH_04860 at 889.514 kb on - strand, within NOLOHH_04860 at 889.514 kb on - strand, within NOLOHH_04860 at 889.545 kb on - strand, within NOLOHH_04860 at 889.603 kb on - strand, within NOLOHH_04860 at 889.603 kb on - strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.606 kb on - strand, within NOLOHH_04860 at 889.633 kb on + strand, within NOLOHH_04860 at 889.757 kb on - strand, within NOLOHH_04860 at 889.788 kb on + strand, within NOLOHH_04860 at 889.788 kb on + strand, within NOLOHH_04860 at 889.789 kb on - strand, within NOLOHH_04860 at 889.789 kb on - strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.076 kb on - strand, within NOLOHH_04860 at 890.076 kb on - strand, within NOLOHH_04860 at 890.466 kb on + strand at 890.467 kb on - strand at 890.531 kb on + strand, within crfC at 890.532 kb on - strand, within crfC at 890.551 kb on + strand, within crfC at 890.552 kb on - strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.574 kb on - strand, within crfC at 890.743 kb on + strand, within crfC at 890.743 kb on + strand, within crfC at 890.743 kb on + strand, within crfC at 890.744 kb on - strand, within crfC at 890.744 kb on - strand, within crfC at 890.744 kb on - strand, within crfC at 890.829 kb on + strand, within crfC at 890.830 kb on - strand, within crfC at 890.883 kb on + strand, within crfC at 890.884 kb on - strand, within crfC at 890.884 kb on - strand, within crfC at 890.937 kb on + strand, within crfC at 890.937 kb on + strand, within crfC at 890.938 kb on - strand, within crfC at 890.984 kb on - strand, within crfC at 891.061 kb on - strand, within crfC at 891.126 kb on + strand, within crfC at 891.182 kb on + strand, within crfC at 891.183 kb on - strand, within crfC at 891.217 kb on - strand, within crfC at 891.239 kb on + strand, within crfC at 891.240 kb on - strand, within crfC at 891.240 kb on - strand, within crfC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 888,568 - proP NOLOHH_04855 0.63 +0.1 888,576 + proP NOLOHH_04855 0.64 -0.5 888,605 + proP NOLOHH_04855 0.66 +1.0 888,606 - proP NOLOHH_04855 0.66 +0.5 888,606 - proP NOLOHH_04855 0.66 -0.7 888,606 - proP NOLOHH_04855 0.66 -0.4 888,606 - proP NOLOHH_04855 0.66 +0.3 888,633 - proP NOLOHH_04855 0.67 +0.5 888,686 + proP NOLOHH_04855 0.71 +0.5 888,687 - proP NOLOHH_04855 0.71 +0.1 888,688 + proP NOLOHH_04855 0.71 -0.3 888,688 + proP NOLOHH_04855 0.71 -1.5 888,688 + proP NOLOHH_04855 0.71 -0.7 888,689 - proP NOLOHH_04855 0.71 -0.2 888,689 - proP NOLOHH_04855 0.71 -0.5 888,689 - proP NOLOHH_04855 0.71 -1.1 888,722 + proP NOLOHH_04855 0.73 -0.2 888,723 - proP NOLOHH_04855 0.73 -1.1 888,753 - proP NOLOHH_04855 0.75 +0.4 888,753 - proP NOLOHH_04855 0.75 -0.6 888,767 - proP NOLOHH_04855 0.76 -2.1 888,806 + proP NOLOHH_04855 0.79 +2.1 888,806 + proP NOLOHH_04855 0.79 +0.5 888,807 - proP NOLOHH_04855 0.79 -0.1 888,807 - proP NOLOHH_04855 0.79 +0.1 888,807 - proP NOLOHH_04855 0.79 +0.0 888,815 + proP NOLOHH_04855 0.80 -1.2 888,816 - proP NOLOHH_04855 0.80 +1.1 888,816 - proP NOLOHH_04855 0.80 -0.6 888,816 - proP NOLOHH_04855 0.80 -0.1 888,844 + proP NOLOHH_04855 0.82 -0.3 888,844 + proP NOLOHH_04855 0.82 +0.3 888,844 + proP NOLOHH_04855 0.82 +1.7 888,844 + proP NOLOHH_04855 0.82 +0.0 888,845 - proP NOLOHH_04855 0.82 -1.2 888,845 - proP NOLOHH_04855 0.82 -0.7 888,845 - proP NOLOHH_04855 0.82 +0.1 888,845 - proP NOLOHH_04855 0.82 +0.3 888,845 - proP NOLOHH_04855 0.82 -1.1 888,860 + proP NOLOHH_04855 0.83 +0.2 888,861 - proP NOLOHH_04855 0.83 +1.6 888,861 - proP NOLOHH_04855 0.83 -0.4 888,861 - proP NOLOHH_04855 0.83 +0.2 888,861 - proP NOLOHH_04855 0.83 -0.5 888,965 + proP NOLOHH_04855 0.90 -2.1 888,969 + proP NOLOHH_04855 0.90 +0.5 888,970 - proP NOLOHH_04855 0.90 -0.3 888,970 - proP NOLOHH_04855 0.90 -0.1 888,976 + -0.6 888,977 - -1.9 888,991 + +0.1 888,991 + +1.2 888,992 - +0.5 888,992 - +0.5 889,071 - -0.2 889,121 + +0.8 889,121 + -0.5 889,122 - -0.6 889,122 - -1.1 889,218 + -1.2 889,240 + -0.4 889,240 + -0.5 889,241 - +0.5 889,241 - -0.5 889,241 - +0.9 889,241 - +1.3 889,263 - -1.2 889,263 - +0.3 889,325 - +0.5 889,383 - +0.0 889,386 + -0.9 889,513 + NOLOHH_04860 0.15 +0.5 889,513 + NOLOHH_04860 0.15 -0.4 889,514 - NOLOHH_04860 0.15 +0.6 889,514 - NOLOHH_04860 0.15 -0.4 889,545 - NOLOHH_04860 0.18 +1.3 889,603 - NOLOHH_04860 0.25 +1.8 889,603 - NOLOHH_04860 0.25 +0.1 889,605 + NOLOHH_04860 0.25 -0.1 889,605 + NOLOHH_04860 0.25 -0.3 889,605 + NOLOHH_04860 0.25 +1.1 889,605 + NOLOHH_04860 0.25 -0.8 889,605 + NOLOHH_04860 0.25 +0.1 889,606 - NOLOHH_04860 0.25 -0.8 889,633 + NOLOHH_04860 0.28 +1.1 889,757 - NOLOHH_04860 0.42 +0.3 889,788 + NOLOHH_04860 0.46 -0.3 889,788 + NOLOHH_04860 0.46 -0.3 889,789 - NOLOHH_04860 0.46 -0.4 889,789 - NOLOHH_04860 0.46 +0.1 889,905 + NOLOHH_04860 0.59 -0.1 889,905 + NOLOHH_04860 0.59 +0.4 889,905 + NOLOHH_04860 0.59 +0.7 889,905 + NOLOHH_04860 0.59 +1.5 889,905 + NOLOHH_04860 0.59 -1.8 889,905 + NOLOHH_04860 0.59 -0.5 889,905 + NOLOHH_04860 0.59 +0.9 889,905 + NOLOHH_04860 0.59 -0.8 889,905 + NOLOHH_04860 0.59 -0.0 889,905 + NOLOHH_04860 0.59 -0.6 889,905 + NOLOHH_04860 0.59 +1.7 889,905 + NOLOHH_04860 0.59 -0.4 889,905 + NOLOHH_04860 0.59 +0.3 889,906 - NOLOHH_04860 0.59 -0.4 889,906 - NOLOHH_04860 0.59 +0.8 889,906 - NOLOHH_04860 0.59 +0.5 889,906 - NOLOHH_04860 0.59 +0.1 889,906 - NOLOHH_04860 0.59 +0.7 889,906 - NOLOHH_04860 0.59 +0.2 889,906 - NOLOHH_04860 0.59 +0.8 890,075 + NOLOHH_04860 0.78 -0.5 890,075 + NOLOHH_04860 0.78 +1.4 890,075 + NOLOHH_04860 0.78 -1.5 890,076 - NOLOHH_04860 0.79 -0.6 890,076 - NOLOHH_04860 0.79 -0.0 890,466 + -0.9 890,467 - +1.3 890,531 + crfC NOLOHH_04865 0.12 +0.3 890,532 - crfC NOLOHH_04865 0.12 -1.1 890,551 + crfC NOLOHH_04865 0.13 -0.3 890,552 - crfC NOLOHH_04865 0.13 -0.7 890,573 + crfC NOLOHH_04865 0.14 +0.7 890,573 + crfC NOLOHH_04865 0.14 +0.3 890,573 + crfC NOLOHH_04865 0.14 +1.4 890,573 + crfC NOLOHH_04865 0.14 -2.8 890,574 - crfC NOLOHH_04865 0.14 -0.2 890,743 + crfC NOLOHH_04865 0.22 +0.8 890,743 + crfC NOLOHH_04865 0.22 -1.1 890,743 + crfC NOLOHH_04865 0.22 -1.1 890,744 - crfC NOLOHH_04865 0.22 +0.6 890,744 - crfC NOLOHH_04865 0.22 +0.5 890,744 - crfC NOLOHH_04865 0.22 -1.1 890,829 + crfC NOLOHH_04865 0.26 +0.3 890,830 - crfC NOLOHH_04865 0.26 -0.5 890,883 + crfC NOLOHH_04865 0.28 +0.8 890,884 - crfC NOLOHH_04865 0.28 -1.1 890,884 - crfC NOLOHH_04865 0.28 +0.0 890,937 + crfC NOLOHH_04865 0.30 -0.8 890,937 + crfC NOLOHH_04865 0.30 +1.3 890,938 - crfC NOLOHH_04865 0.30 -0.1 890,984 - crfC NOLOHH_04865 0.32 +1.7 891,061 - crfC NOLOHH_04865 0.36 -0.9 891,126 + crfC NOLOHH_04865 0.39 -0.6 891,182 + crfC NOLOHH_04865 0.41 -0.2 891,183 - crfC NOLOHH_04865 0.41 +0.5 891,217 - crfC NOLOHH_04865 0.43 -0.4 891,239 + crfC NOLOHH_04865 0.44 -0.3 891,240 - crfC NOLOHH_04865 0.44 +0.9 891,240 - crfC NOLOHH_04865 0.44 +0.3
Or see this region's nucleotide sequence