Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pmrB and pmrR overlap by 25 nucleotides pmrR and proP are separated by 111 nucleotides
NOLOHH_04840: pmrB - two-component system sensor histidine kinase PmrB, at 886,342 to 887,442
pmrB
NOLOHH_04850: pmrR - Putative membrane protein PmrR, at 887,418 to 887,507
pmrR
NOLOHH_04855: proP - glycine betaine/L-proline transporter ProP, at 887,619 to 889,121
proP
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 886.461 kb on + strand, within pmrB at 886.461 kb on + strand, within pmrB at 886.494 kb on - strand, within pmrB at 886.592 kb on + strand, within pmrB at 886.592 kb on + strand, within pmrB at 886.596 kb on + strand, within pmrB at 886.596 kb on + strand, within pmrB at 886.597 kb on - strand, within pmrB at 886.604 kb on - strand, within pmrB at 886.680 kb on - strand, within pmrB at 886.877 kb on + strand, within pmrB at 886.878 kb on - strand, within pmrB at 886.878 kb on - strand, within pmrB at 886.878 kb on - strand, within pmrB at 886.972 kb on + strand, within pmrB at 886.972 kb on + strand, within pmrB at 886.972 kb on + strand, within pmrB at 886.973 kb on - strand, within pmrB at 887.015 kb on - strand, within pmrB at 887.061 kb on - strand, within pmrB at 887.061 kb on - strand, within pmrB at 887.061 kb on - strand, within pmrB at 887.175 kb on + strand, within pmrB at 887.181 kb on + strand, within pmrB at 887.182 kb on - strand, within pmrB at 887.182 kb on - strand, within pmrB at 887.236 kb on - strand, within pmrB at 887.247 kb on + strand, within pmrB at 887.248 kb on - strand, within pmrB at 887.266 kb on - strand, within pmrB at 887.276 kb on + strand, within pmrB at 887.276 kb on + strand, within pmrB at 887.276 kb on + strand, within pmrB at 887.280 kb on + strand, within pmrB at 887.281 kb on - strand, within pmrB at 887.316 kb on - strand, within pmrB at 887.316 kb on - strand, within pmrB at 887.316 kb on - strand, within pmrB at 887.319 kb on + strand, within pmrB at 887.319 kb on + strand, within pmrB at 887.320 kb on - strand, within pmrB at 887.320 kb on - strand, within pmrB at 887.320 kb on - strand, within pmrB at 887.320 kb on - strand, within pmrB at 887.438 kb on + strand at 887.438 kb on + strand at 887.438 kb on + strand at 887.440 kb on + strand at 887.441 kb on - strand at 887.441 kb on - strand at 887.477 kb on + strand, within pmrR at 887.492 kb on - strand, within pmrR at 887.492 kb on - strand, within pmrR at 887.538 kb on + strand at 887.539 kb on - strand at 887.554 kb on + strand at 887.554 kb on + strand at 887.555 kb on - strand at 887.566 kb on - strand at 887.566 kb on - strand at 887.586 kb on - strand at 887.620 kb on + strand at 887.621 kb on - strand at 887.693 kb on + strand at 887.694 kb on - strand at 887.694 kb on - strand at 887.754 kb on + strand at 887.754 kb on + strand at 887.755 kb on - strand at 887.755 kb on - strand at 887.755 kb on - strand at 887.755 kb on - strand at 887.755 kb on - strand at 887.757 kb on - strand at 887.757 kb on - strand at 887.757 kb on - strand at 887.815 kb on - strand, within proP at 887.827 kb on - strand, within proP at 887.854 kb on + strand, within proP at 887.858 kb on - strand, within proP at 887.943 kb on - strand, within proP at 887.966 kb on - strand, within proP at 887.971 kb on - strand, within proP at 888.000 kb on - strand, within proP at 888.027 kb on - strand, within proP at 888.084 kb on - strand, within proP at 888.093 kb on - strand, within proP at 888.135 kb on + strand, within proP at 888.136 kb on - strand, within proP at 888.136 kb on - strand, within proP at 888.136 kb on - strand, within proP at 888.136 kb on - strand, within proP at 888.136 kb on - strand, within proP at 888.200 kb on + strand, within proP at 888.210 kb on - strand, within proP at 888.221 kb on + strand, within proP at 888.222 kb on - strand, within proP at 888.247 kb on + strand, within proP at 888.268 kb on + strand, within proP at 888.269 kb on - strand, within proP at 888.279 kb on - strand, within proP at 888.279 kb on - strand, within proP at 888.280 kb on + strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.281 kb on - strand, within proP at 888.295 kb on + strand, within proP at 888.295 kb on + strand, within proP at 888.295 kb on + strand, within proP at 888.295 kb on + strand, within proP at 888.296 kb on - strand, within proP at 888.296 kb on - strand, within proP at 888.296 kb on - strand, within proP at 888.296 kb on - strand, within proP at 888.296 kb on - strand, within proP at 888.298 kb on + strand, within proP at 888.298 kb on + strand, within proP at 888.299 kb on - strand, within proP at 888.299 kb on - strand, within proP at 888.299 kb on - strand, within proP at 888.329 kb on + strand, within proP at 888.329 kb on + strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP at 888.330 kb on - strand, within proP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 886,461 + pmrB NOLOHH_04840 0.11 -1.4 886,461 + pmrB NOLOHH_04840 0.11 +0.8 886,494 - pmrB NOLOHH_04840 0.14 -0.7 886,592 + pmrB NOLOHH_04840 0.23 -1.1 886,592 + pmrB NOLOHH_04840 0.23 -0.2 886,596 + pmrB NOLOHH_04840 0.23 +0.3 886,596 + pmrB NOLOHH_04840 0.23 -0.1 886,597 - pmrB NOLOHH_04840 0.23 -0.7 886,604 - pmrB NOLOHH_04840 0.24 +0.5 886,680 - pmrB NOLOHH_04840 0.31 -0.3 886,877 + pmrB NOLOHH_04840 0.49 -0.5 886,878 - pmrB NOLOHH_04840 0.49 +2.1 886,878 - pmrB NOLOHH_04840 0.49 +1.6 886,878 - pmrB NOLOHH_04840 0.49 +0.5 886,972 + pmrB NOLOHH_04840 0.57 -0.2 886,972 + pmrB NOLOHH_04840 0.57 +1.2 886,972 + pmrB NOLOHH_04840 0.57 -0.1 886,973 - pmrB NOLOHH_04840 0.57 +1.2 887,015 - pmrB NOLOHH_04840 0.61 -0.6 887,061 - pmrB NOLOHH_04840 0.65 +0.3 887,061 - pmrB NOLOHH_04840 0.65 +0.5 887,061 - pmrB NOLOHH_04840 0.65 -0.3 887,175 + pmrB NOLOHH_04840 0.76 -1.3 887,181 + pmrB NOLOHH_04840 0.76 +1.2 887,182 - pmrB NOLOHH_04840 0.76 +0.3 887,182 - pmrB NOLOHH_04840 0.76 +0.2 887,236 - pmrB NOLOHH_04840 0.81 -0.8 887,247 + pmrB NOLOHH_04840 0.82 +1.0 887,248 - pmrB NOLOHH_04840 0.82 -0.5 887,266 - pmrB NOLOHH_04840 0.84 +0.2 887,276 + pmrB NOLOHH_04840 0.85 +0.3 887,276 + pmrB NOLOHH_04840 0.85 -1.2 887,276 + pmrB NOLOHH_04840 0.85 +0.5 887,280 + pmrB NOLOHH_04840 0.85 -0.2 887,281 - pmrB NOLOHH_04840 0.85 +0.6 887,316 - pmrB NOLOHH_04840 0.88 -0.4 887,316 - pmrB NOLOHH_04840 0.88 +0.1 887,316 - pmrB NOLOHH_04840 0.88 +0.0 887,319 + pmrB NOLOHH_04840 0.89 +0.2 887,319 + pmrB NOLOHH_04840 0.89 -0.6 887,320 - pmrB NOLOHH_04840 0.89 +0.1 887,320 - pmrB NOLOHH_04840 0.89 +0.9 887,320 - pmrB NOLOHH_04840 0.89 +0.0 887,320 - pmrB NOLOHH_04840 0.89 +1.3 887,438 + -0.5 887,438 + -0.7 887,438 + -0.5 887,440 + -0.5 887,441 - +0.0 887,441 - -0.2 887,477 + pmrR NOLOHH_04850 0.66 -0.3 887,492 - pmrR NOLOHH_04850 0.82 -0.5 887,492 - pmrR NOLOHH_04850 0.82 +0.5 887,538 + +1.2 887,539 - +0.2 887,554 + -0.5 887,554 + +0.3 887,555 - +0.5 887,566 - +0.5 887,566 - +0.7 887,586 - +0.7 887,620 + +1.5 887,621 - -0.7 887,693 + -0.5 887,694 - +0.5 887,694 - -0.1 887,754 + +0.3 887,754 + -1.1 887,755 - +0.7 887,755 - -0.0 887,755 - -0.4 887,755 - -1.9 887,755 - +0.5 887,757 - -0.5 887,757 - +0.2 887,757 - -0.4 887,815 - proP NOLOHH_04855 0.13 +1.1 887,827 - proP NOLOHH_04855 0.14 -0.2 887,854 + proP NOLOHH_04855 0.16 +0.1 887,858 - proP NOLOHH_04855 0.16 -2.6 887,943 - proP NOLOHH_04855 0.22 -0.1 887,966 - proP NOLOHH_04855 0.23 +0.5 887,971 - proP NOLOHH_04855 0.23 -0.8 888,000 - proP NOLOHH_04855 0.25 -1.2 888,027 - proP NOLOHH_04855 0.27 +0.7 888,084 - proP NOLOHH_04855 0.31 +1.3 888,093 - proP NOLOHH_04855 0.32 -0.3 888,135 + proP NOLOHH_04855 0.34 -0.2 888,136 - proP NOLOHH_04855 0.34 -1.1 888,136 - proP NOLOHH_04855 0.34 -0.2 888,136 - proP NOLOHH_04855 0.34 -1.7 888,136 - proP NOLOHH_04855 0.34 +0.5 888,136 - proP NOLOHH_04855 0.34 +0.3 888,200 + proP NOLOHH_04855 0.39 -0.6 888,210 - proP NOLOHH_04855 0.39 +0.0 888,221 + proP NOLOHH_04855 0.40 +0.2 888,222 - proP NOLOHH_04855 0.40 +0.7 888,247 + proP NOLOHH_04855 0.42 -0.1 888,268 + proP NOLOHH_04855 0.43 -1.1 888,269 - proP NOLOHH_04855 0.43 -0.8 888,279 - proP NOLOHH_04855 0.44 -0.0 888,279 - proP NOLOHH_04855 0.44 +0.3 888,280 + proP NOLOHH_04855 0.44 +0.8 888,281 - proP NOLOHH_04855 0.44 -0.8 888,281 - proP NOLOHH_04855 0.44 -0.4 888,281 - proP NOLOHH_04855 0.44 -0.5 888,281 - proP NOLOHH_04855 0.44 -0.1 888,281 - proP NOLOHH_04855 0.44 -0.2 888,281 - proP NOLOHH_04855 0.44 -0.5 888,281 - proP NOLOHH_04855 0.44 -0.7 888,281 - proP NOLOHH_04855 0.44 -0.6 888,281 - proP NOLOHH_04855 0.44 -0.1 888,281 - proP NOLOHH_04855 0.44 -0.8 888,295 + proP NOLOHH_04855 0.45 -1.3 888,295 + proP NOLOHH_04855 0.45 -1.9 888,295 + proP NOLOHH_04855 0.45 -0.5 888,295 + proP NOLOHH_04855 0.45 +0.2 888,296 - proP NOLOHH_04855 0.45 +1.5 888,296 - proP NOLOHH_04855 0.45 +0.4 888,296 - proP NOLOHH_04855 0.45 -0.7 888,296 - proP NOLOHH_04855 0.45 -0.3 888,296 - proP NOLOHH_04855 0.45 +1.5 888,298 + proP NOLOHH_04855 0.45 -1.0 888,298 + proP NOLOHH_04855 0.45 +0.2 888,299 - proP NOLOHH_04855 0.45 -1.2 888,299 - proP NOLOHH_04855 0.45 -0.8 888,299 - proP NOLOHH_04855 0.45 -0.1 888,329 + proP NOLOHH_04855 0.47 -1.5 888,329 + proP NOLOHH_04855 0.47 +0.3 888,330 - proP NOLOHH_04855 0.47 +1.1 888,330 - proP NOLOHH_04855 0.47 +1.5 888,330 - proP NOLOHH_04855 0.47 +1.1 888,330 - proP NOLOHH_04855 0.47 +0.5 888,330 - proP NOLOHH_04855 0.47 +0.2 888,330 - proP NOLOHH_04855 0.47 +0.1 888,330 - proP NOLOHH_04855 0.47 +0.8
Or see this region's nucleotide sequence