Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysS and ghoT are separated by 118 nucleotides ghoT and ghoS are separated by 27 nucleotides ghoS and yjdJ are separated by 226 nucleotides yjdJ and yjdI are separated by 11 nucleotides yjdI and dcuS are separated by 180 nucleotides
NOLOHH_04750: lysS - lysine--tRNA ligase, at 864,905 to 866,422
lysS
NOLOHH_04755: ghoT - type V toxin-antitoxin system toxin GhoT, at 866,541 to 866,714
ghoT
NOLOHH_04760: ghoS - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 866,742 to 867,038
ghoS
NOLOHH_04765: yjdJ - Uncharacterized protein YjdJ, at 867,265 to 867,537
yjdJ
NOLOHH_04770: yjdI - Uncharacterized protein YjdI, at 867,549 to 867,779
yjdI
NOLOHH_04775: dcuS - Sensor histidine kinase DcuS, at 867,960 to 869,591
dcuS
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 865.745 kb on + strand, within lysS at 865.745 kb on + strand, within lysS at 865.745 kb on + strand, within lysS at 865.754 kb on + strand, within lysS at 865.755 kb on - strand, within lysS at 865.841 kb on + strand, within lysS at 865.842 kb on - strand, within lysS at 865.910 kb on + strand, within lysS at 865.976 kb on - strand, within lysS at 866.014 kb on + strand, within lysS at 866.014 kb on + strand, within lysS at 866.014 kb on + strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.015 kb on - strand, within lysS at 866.071 kb on + strand, within lysS at 866.113 kb on + strand, within lysS at 866.186 kb on - strand, within lysS at 866.273 kb on + strand at 866.274 kb on - strand at 866.274 kb on - strand at 866.285 kb on + strand at 866.303 kb on + strand at 866.304 kb on - strand at 866.354 kb on - strand at 866.375 kb on - strand at 866.375 kb on - strand at 866.378 kb on - strand at 866.433 kb on - strand at 866.533 kb on + strand at 866.534 kb on - strand at 866.621 kb on + strand, within ghoT at 866.622 kb on - strand, within ghoT at 866.622 kb on - strand, within ghoT at 866.664 kb on + strand, within ghoT at 866.822 kb on + strand, within ghoS at 866.940 kb on - strand, within ghoS at 866.944 kb on + strand, within ghoS at 866.944 kb on + strand, within ghoS at 866.980 kb on + strand, within ghoS at 867.010 kb on + strand at 867.010 kb on + strand at 867.011 kb on - strand at 867.011 kb on - strand at 867.051 kb on - strand at 867.110 kb on + strand at 867.117 kb on + strand at 867.285 kb on - strand at 867.501 kb on + strand, within yjdJ at 867.501 kb on + strand, within yjdJ at 867.562 kb on + strand at 867.657 kb on - strand, within yjdI at 867.660 kb on + strand, within yjdI at 867.678 kb on + strand, within yjdI at 867.678 kb on + strand, within yjdI at 867.678 kb on + strand, within yjdI at 867.702 kb on + strand, within yjdI at 867.702 kb on + strand, within yjdI at 867.703 kb on - strand, within yjdI at 867.703 kb on - strand, within yjdI at 867.740 kb on + strand, within yjdI at 867.800 kb on + strand at 867.801 kb on - strand at 867.813 kb on - strand at 867.814 kb on + strand at 867.814 kb on + strand at 867.815 kb on - strand at 867.815 kb on - strand at 867.815 kb on - strand at 867.815 kb on - strand at 867.838 kb on - strand at 867.838 kb on - strand at 867.877 kb on - strand at 867.877 kb on - strand at 867.877 kb on - strand at 867.877 kb on - strand at 867.878 kb on + strand at 867.878 kb on + strand at 867.879 kb on - strand at 867.880 kb on + strand at 867.881 kb on - strand at 867.881 kb on - strand at 867.881 kb on - strand at 867.881 kb on - strand at 867.926 kb on + strand at 867.926 kb on + strand at 867.926 kb on + strand at 867.927 kb on - strand at 867.927 kb on - strand at 867.927 kb on - strand at 868.014 kb on - strand at 868.027 kb on + strand at 868.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 865,745 + lysS NOLOHH_04750 0.55 -0.8 865,745 + lysS NOLOHH_04750 0.55 -0.6 865,745 + lysS NOLOHH_04750 0.55 -0.1 865,754 + lysS NOLOHH_04750 0.56 -0.6 865,755 - lysS NOLOHH_04750 0.56 -1.1 865,841 + lysS NOLOHH_04750 0.62 -0.7 865,842 - lysS NOLOHH_04750 0.62 +2.0 865,910 + lysS NOLOHH_04750 0.66 -0.2 865,976 - lysS NOLOHH_04750 0.71 +0.5 866,014 + lysS NOLOHH_04750 0.73 +0.5 866,014 + lysS NOLOHH_04750 0.73 +0.6 866,014 + lysS NOLOHH_04750 0.73 +1.4 866,015 - lysS NOLOHH_04750 0.73 -0.1 866,015 - lysS NOLOHH_04750 0.73 +0.4 866,015 - lysS NOLOHH_04750 0.73 -0.3 866,015 - lysS NOLOHH_04750 0.73 +1.1 866,015 - lysS NOLOHH_04750 0.73 -0.5 866,071 + lysS NOLOHH_04750 0.77 -1.5 866,113 + lysS NOLOHH_04750 0.80 +0.6 866,186 - lysS NOLOHH_04750 0.84 +0.5 866,273 + +1.1 866,274 - +0.8 866,274 - -2.5 866,285 + -0.0 866,303 + -0.2 866,304 - -0.1 866,354 - +0.5 866,375 - -1.1 866,375 - +0.2 866,378 - +0.5 866,433 - +0.3 866,533 + -0.1 866,534 - -2.1 866,621 + ghoT NOLOHH_04755 0.46 +0.9 866,622 - ghoT NOLOHH_04755 0.47 +0.3 866,622 - ghoT NOLOHH_04755 0.47 +0.3 866,664 + ghoT NOLOHH_04755 0.71 -0.3 866,822 + ghoS NOLOHH_04760 0.27 +0.3 866,940 - ghoS NOLOHH_04760 0.67 +0.2 866,944 + ghoS NOLOHH_04760 0.68 -0.5 866,944 + ghoS NOLOHH_04760 0.68 +1.5 866,980 + ghoS NOLOHH_04760 0.80 +0.6 867,010 + -0.5 867,010 + +1.5 867,011 - +2.1 867,011 - +2.1 867,051 - +1.1 867,110 + +0.9 867,117 + +0.5 867,285 - +0.6 867,501 + yjdJ NOLOHH_04765 0.86 +0.0 867,501 + yjdJ NOLOHH_04765 0.86 -0.3 867,562 + -1.1 867,657 - yjdI NOLOHH_04770 0.47 +0.4 867,660 + yjdI NOLOHH_04770 0.48 -3.4 867,678 + yjdI NOLOHH_04770 0.56 -0.5 867,678 + yjdI NOLOHH_04770 0.56 -1.3 867,678 + yjdI NOLOHH_04770 0.56 -0.9 867,702 + yjdI NOLOHH_04770 0.66 -0.7 867,702 + yjdI NOLOHH_04770 0.66 +0.3 867,703 - yjdI NOLOHH_04770 0.67 +0.5 867,703 - yjdI NOLOHH_04770 0.67 +1.0 867,740 + yjdI NOLOHH_04770 0.83 +0.5 867,800 + +2.5 867,801 - +0.9 867,813 - +0.3 867,814 + -0.9 867,814 + +0.7 867,815 - +0.7 867,815 - -1.1 867,815 - +0.8 867,815 - +0.3 867,838 - -1.2 867,838 - -0.2 867,877 - -0.9 867,877 - -0.1 867,877 - -2.1 867,877 - -0.5 867,878 + -0.2 867,878 + +0.1 867,879 - -0.5 867,880 + -0.9 867,881 - +0.4 867,881 - +0.1 867,881 - +0.6 867,881 - +1.0 867,926 + -0.3 867,926 + +1.3 867,926 + -0.4 867,927 - +0.5 867,927 - -1.1 867,927 - +0.2 868,014 - -1.6 868,027 + -0.9 868,028 - +1.4
Or see this region's nucleotide sequence