Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cadA and dtpC are separated by 58 nucleotides dtpC and lysS are separated by 236 nucleotides
NOLOHH_04740: cadA - lysine decarboxylase CadA, at 861,005 to 863,152
cadA
NOLOHH_04745: dtpC - dipeptide/tripeptide permease DtpC, at 863,211 to 864,668
dtpC
NOLOHH_04750: lysS - lysine--tRNA ligase, at 864,905 to 866,422
lysS
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 862.362 kb on + strand, within cadA at 862.362 kb on + strand, within cadA at 862.363 kb on - strand, within cadA at 862.363 kb on - strand, within cadA at 862.363 kb on - strand, within cadA at 862.363 kb on - strand, within cadA at 862.457 kb on + strand, within cadA at 862.457 kb on + strand, within cadA at 862.457 kb on + strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.458 kb on - strand, within cadA at 862.554 kb on - strand, within cadA at 862.595 kb on + strand, within cadA at 862.596 kb on - strand, within cadA at 862.597 kb on + strand, within cadA at 862.597 kb on + strand, within cadA at 862.725 kb on - strand, within cadA at 862.824 kb on - strand, within cadA at 862.824 kb on - strand, within cadA at 862.895 kb on - strand, within cadA at 862.910 kb on + strand, within cadA at 862.911 kb on - strand, within cadA at 862.927 kb on - strand, within cadA at 862.933 kb on + strand, within cadA at 862.933 kb on + strand, within cadA at 862.933 kb on + strand, within cadA at 862.933 kb on + strand, within cadA at 862.934 kb on - strand, within cadA at 862.945 kb on + strand at 862.945 kb on + strand at 863.093 kb on + strand at 863.115 kb on - strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.241 kb on + strand at 863.242 kb on - strand at 863.242 kb on - strand at 863.242 kb on - strand at 863.242 kb on - strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.244 kb on + strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.245 kb on - strand at 863.246 kb on + strand at 863.272 kb on - strand at 863.299 kb on + strand at 863.310 kb on + strand at 863.311 kb on - strand at 863.367 kb on + strand, within dtpC at 863.368 kb on - strand, within dtpC at 863.382 kb on + strand, within dtpC at 863.382 kb on + strand, within dtpC at 863.383 kb on - strand, within dtpC at 863.383 kb on - strand, within dtpC at 863.383 kb on - strand, within dtpC at 863.393 kb on + strand, within dtpC at 863.495 kb on + strand, within dtpC at 863.496 kb on - strand, within dtpC at 863.537 kb on + strand, within dtpC at 863.537 kb on + strand, within dtpC at 863.537 kb on + strand, within dtpC at 863.537 kb on + strand, within dtpC at 863.538 kb on - strand, within dtpC at 863.538 kb on - strand, within dtpC at 863.554 kb on + strand, within dtpC at 863.593 kb on - strand, within dtpC at 863.637 kb on + strand, within dtpC at 863.637 kb on + strand, within dtpC at 863.638 kb on - strand, within dtpC at 863.638 kb on - strand, within dtpC at 863.795 kb on + strand, within dtpC at 863.795 kb on + strand, within dtpC at 863.798 kb on + strand, within dtpC at 863.799 kb on - strand, within dtpC at 863.799 kb on - strand, within dtpC at 863.799 kb on - strand, within dtpC at 863.820 kb on - strand, within dtpC at 863.843 kb on - strand, within dtpC at 863.919 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.013 kb on + strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.014 kb on - strand, within dtpC at 864.068 kb on + strand, within dtpC at 864.116 kb on + strand, within dtpC at 864.117 kb on - strand, within dtpC at 864.124 kb on + strand, within dtpC at 864.124 kb on + strand, within dtpC at 864.125 kb on - strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.128 kb on + strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.129 kb on - strand, within dtpC at 864.256 kb on + strand, within dtpC at 864.256 kb on + strand, within dtpC at 864.257 kb on - strand, within dtpC at 864.257 kb on - strand, within dtpC at 864.278 kb on + strand, within dtpC at 864.278 kb on + strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.279 kb on - strand, within dtpC at 864.381 kb on - strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.444 kb on + strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.445 kb on - strand, within dtpC at 864.446 kb on + strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.447 kb on - strand, within dtpC at 864.518 kb on + strand, within dtpC at 864.601 kb on + strand at 864.644 kb on + strand at 864.645 kb on - strand at 864.649 kb on + strand at 864.735 kb on - strand at 864.737 kb on + strand at 864.738 kb on - strand at 864.763 kb on + strand at 864.764 kb on - strand at 864.767 kb on + strand at 864.767 kb on + strand at 864.767 kb on + strand at 864.768 kb on - strand at 864.768 kb on - strand at 864.770 kb on + strand at 864.776 kb on + strand at 864.790 kb on - strand at 864.790 kb on - strand at 864.796 kb on + strand at 864.797 kb on - strand at 864.810 kb on + strand at 864.811 kb on - strand at 864.821 kb on - strand at 864.821 kb on - strand at 864.823 kb on + strand at 864.824 kb on - strand at 864.826 kb on + strand at 864.840 kb on - strand at 864.840 kb on - strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.842 kb on + strand at 864.850 kb on - strand at 864.865 kb on + strand at 864.870 kb on - strand at 864.870 kb on - strand at 864.892 kb on + strand at 864.990 kb on + strand at 864.990 kb on + strand at 865.036 kb on + strand at 865.037 kb on - strand at 865.075 kb on + strand, within lysS at 865.139 kb on - strand, within lysS at 865.139 kb on - strand, within lysS at 865.162 kb on - strand, within lysS at 865.196 kb on + strand, within lysS at 865.196 kb on + strand, within lysS at 865.196 kb on + strand, within lysS at 865.197 kb on - strand, within lysS at 865.197 kb on - strand, within lysS at 865.211 kb on - strand, within lysS at 865.229 kb on + strand, within lysS at 865.231 kb on + strand, within lysS at 865.231 kb on + strand, within lysS at 865.325 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.354 kb on - strand, within lysS at 865.362 kb on + strand, within lysS at 865.369 kb on + strand, within lysS at 865.438 kb on + strand, within lysS at 865.521 kb on + strand, within lysS at 865.522 kb on - strand, within lysS at 865.543 kb on - strand, within lysS at 865.543 kb on - strand, within lysS at 865.599 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.603 kb on + strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.604 kb on - strand, within lysS at 865.607 kb on + strand, within lysS at 865.607 kb on + strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.608 kb on - strand, within lysS at 865.631 kb on + strand, within lysS at 865.631 kb on + strand, within lysS at 865.650 kb on + strand, within lysS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 862,362 + cadA NOLOHH_04740 0.63 -0.5 862,362 + cadA NOLOHH_04740 0.63 -0.7 862,363 - cadA NOLOHH_04740 0.63 +0.5 862,363 - cadA NOLOHH_04740 0.63 -2.3 862,363 - cadA NOLOHH_04740 0.63 -0.2 862,363 - cadA NOLOHH_04740 0.63 -2.1 862,457 + cadA NOLOHH_04740 0.68 -2.3 862,457 + cadA NOLOHH_04740 0.68 +0.7 862,457 + cadA NOLOHH_04740 0.68 -0.9 862,458 - cadA NOLOHH_04740 0.68 -0.3 862,458 - cadA NOLOHH_04740 0.68 -1.8 862,458 - cadA NOLOHH_04740 0.68 +0.5 862,458 - cadA NOLOHH_04740 0.68 -0.3 862,458 - cadA NOLOHH_04740 0.68 -0.5 862,458 - cadA NOLOHH_04740 0.68 -0.2 862,458 - cadA NOLOHH_04740 0.68 -0.2 862,554 - cadA NOLOHH_04740 0.72 -0.1 862,595 + cadA NOLOHH_04740 0.74 -1.3 862,596 - cadA NOLOHH_04740 0.74 -1.5 862,597 + cadA NOLOHH_04740 0.74 -0.5 862,597 + cadA NOLOHH_04740 0.74 +0.2 862,725 - cadA NOLOHH_04740 0.80 +0.8 862,824 - cadA NOLOHH_04740 0.85 -0.5 862,824 - cadA NOLOHH_04740 0.85 +0.8 862,895 - cadA NOLOHH_04740 0.88 -0.7 862,910 + cadA NOLOHH_04740 0.89 -0.1 862,911 - cadA NOLOHH_04740 0.89 -0.1 862,927 - cadA NOLOHH_04740 0.89 +0.5 862,933 + cadA NOLOHH_04740 0.90 +0.2 862,933 + cadA NOLOHH_04740 0.90 +0.1 862,933 + cadA NOLOHH_04740 0.90 +1.6 862,933 + cadA NOLOHH_04740 0.90 +0.5 862,934 - cadA NOLOHH_04740 0.90 -0.1 862,945 + +0.9 862,945 + +1.3 863,093 + +0.9 863,115 - -0.7 863,241 + -0.1 863,241 + +0.2 863,241 + +1.1 863,241 + -0.5 863,241 + -0.5 863,241 + -0.2 863,241 + -0.5 863,241 + -0.1 863,242 - +0.6 863,242 - -0.9 863,242 - -0.9 863,242 - +0.5 863,244 + -0.5 863,244 + -0.7 863,244 + -0.1 863,244 + +0.3 863,244 + -1.5 863,244 + -0.2 863,244 + +1.4 863,244 + -0.1 863,244 + -0.1 863,244 + +0.5 863,244 + -0.2 863,244 + +0.2 863,245 - -1.5 863,245 - -0.2 863,245 - -0.5 863,245 - +0.8 863,245 - +0.2 863,245 - +0.5 863,245 - -0.5 863,245 - -0.5 863,245 - -0.9 863,245 - +0.0 863,245 - +0.0 863,245 - +0.8 863,245 - -0.2 863,245 - +1.3 863,245 - -0.8 863,246 + +0.8 863,272 - -0.5 863,299 + -0.4 863,310 + -0.6 863,311 - +0.6 863,367 + dtpC NOLOHH_04745 0.11 -0.7 863,368 - dtpC NOLOHH_04745 0.11 +0.5 863,382 + dtpC NOLOHH_04745 0.12 -0.9 863,382 + dtpC NOLOHH_04745 0.12 -0.1 863,383 - dtpC NOLOHH_04745 0.12 +1.1 863,383 - dtpC NOLOHH_04745 0.12 +0.8 863,383 - dtpC NOLOHH_04745 0.12 +0.4 863,393 + dtpC NOLOHH_04745 0.12 -0.3 863,495 + dtpC NOLOHH_04745 0.19 -0.1 863,496 - dtpC NOLOHH_04745 0.20 -0.3 863,537 + dtpC NOLOHH_04745 0.22 -0.2 863,537 + dtpC NOLOHH_04745 0.22 +0.2 863,537 + dtpC NOLOHH_04745 0.22 +0.6 863,537 + dtpC NOLOHH_04745 0.22 -0.2 863,538 - dtpC NOLOHH_04745 0.22 -0.1 863,538 - dtpC NOLOHH_04745 0.22 -0.6 863,554 + dtpC NOLOHH_04745 0.24 +0.3 863,593 - dtpC NOLOHH_04745 0.26 -0.8 863,637 + dtpC NOLOHH_04745 0.29 -0.3 863,637 + dtpC NOLOHH_04745 0.29 +0.4 863,638 - dtpC NOLOHH_04745 0.29 -0.6 863,638 - dtpC NOLOHH_04745 0.29 +0.1 863,795 + dtpC NOLOHH_04745 0.40 +0.5 863,795 + dtpC NOLOHH_04745 0.40 -1.7 863,798 + dtpC NOLOHH_04745 0.40 +0.7 863,799 - dtpC NOLOHH_04745 0.40 -0.1 863,799 - dtpC NOLOHH_04745 0.40 -1.1 863,799 - dtpC NOLOHH_04745 0.40 +0.9 863,820 - dtpC NOLOHH_04745 0.42 +0.9 863,843 - dtpC NOLOHH_04745 0.43 +0.5 863,919 + dtpC NOLOHH_04745 0.49 +0.4 864,013 + dtpC NOLOHH_04745 0.55 +0.1 864,013 + dtpC NOLOHH_04745 0.55 +0.6 864,013 + dtpC NOLOHH_04745 0.55 -0.9 864,013 + dtpC NOLOHH_04745 0.55 -0.2 864,013 + dtpC NOLOHH_04745 0.55 -0.1 864,014 - dtpC NOLOHH_04745 0.55 +0.1 864,014 - dtpC NOLOHH_04745 0.55 +0.2 864,014 - dtpC NOLOHH_04745 0.55 +0.4 864,068 + dtpC NOLOHH_04745 0.59 +0.3 864,116 + dtpC NOLOHH_04745 0.62 +0.5 864,117 - dtpC NOLOHH_04745 0.62 +1.0 864,124 + dtpC NOLOHH_04745 0.63 -1.2 864,124 + dtpC NOLOHH_04745 0.63 -0.1 864,125 - dtpC NOLOHH_04745 0.63 +0.5 864,128 + dtpC NOLOHH_04745 0.63 +0.7 864,128 + dtpC NOLOHH_04745 0.63 -0.9 864,128 + dtpC NOLOHH_04745 0.63 +0.0 864,129 - dtpC NOLOHH_04745 0.63 +0.8 864,129 - dtpC NOLOHH_04745 0.63 +1.2 864,129 - dtpC NOLOHH_04745 0.63 +0.6 864,129 - dtpC NOLOHH_04745 0.63 +0.9 864,256 + dtpC NOLOHH_04745 0.72 +0.2 864,256 + dtpC NOLOHH_04745 0.72 +1.3 864,257 - dtpC NOLOHH_04745 0.72 -0.7 864,257 - dtpC NOLOHH_04745 0.72 -0.1 864,278 + dtpC NOLOHH_04745 0.73 -0.9 864,278 + dtpC NOLOHH_04745 0.73 -0.8 864,279 - dtpC NOLOHH_04745 0.73 -1.0 864,279 - dtpC NOLOHH_04745 0.73 +0.3 864,279 - dtpC NOLOHH_04745 0.73 -1.8 864,279 - dtpC NOLOHH_04745 0.73 -2.7 864,381 - dtpC NOLOHH_04745 0.80 +0.6 864,444 + dtpC NOLOHH_04745 0.85 +2.1 864,444 + dtpC NOLOHH_04745 0.85 -0.5 864,444 + dtpC NOLOHH_04745 0.85 +0.5 864,444 + dtpC NOLOHH_04745 0.85 -0.3 864,444 + dtpC NOLOHH_04745 0.85 +0.2 864,444 + dtpC NOLOHH_04745 0.85 -1.5 864,444 + dtpC NOLOHH_04745 0.85 -0.1 864,444 + dtpC NOLOHH_04745 0.85 +1.4 864,444 + dtpC NOLOHH_04745 0.85 -1.1 864,445 - dtpC NOLOHH_04745 0.85 +0.8 864,445 - dtpC NOLOHH_04745 0.85 +0.2 864,445 - dtpC NOLOHH_04745 0.85 +1.5 864,445 - dtpC NOLOHH_04745 0.85 -1.2 864,446 + dtpC NOLOHH_04745 0.85 +0.6 864,447 - dtpC NOLOHH_04745 0.85 +1.9 864,447 - dtpC NOLOHH_04745 0.85 +0.5 864,447 - dtpC NOLOHH_04745 0.85 -0.3 864,447 - dtpC NOLOHH_04745 0.85 -1.0 864,447 - dtpC NOLOHH_04745 0.85 -2.3 864,518 + dtpC NOLOHH_04745 0.90 -0.2 864,601 + +1.1 864,644 + +0.1 864,645 - +0.9 864,649 + -0.2 864,735 - +0.3 864,737 + +0.8 864,738 - +0.9 864,763 + -0.5 864,764 - +1.1 864,767 + +0.5 864,767 + +0.5 864,767 + +0.3 864,768 - +0.2 864,768 - +1.1 864,770 + +0.5 864,776 + -0.6 864,790 - +0.5 864,790 - -2.3 864,796 + +0.2 864,797 - -1.1 864,810 + +0.4 864,811 - +0.5 864,821 - +1.5 864,821 - -0.8 864,823 + +0.5 864,824 - +0.1 864,826 + +1.0 864,840 - +0.2 864,840 - +0.1 864,842 + -0.1 864,842 + +1.5 864,842 + -0.3 864,842 + +1.1 864,842 + +1.2 864,850 - +0.5 864,865 + +0.8 864,870 - +0.2 864,870 - +0.2 864,892 + -0.2 864,990 + +0.1 864,990 + +0.5 865,036 + +0.3 865,037 - -0.1 865,075 + lysS NOLOHH_04750 0.11 +0.3 865,139 - lysS NOLOHH_04750 0.15 -1.1 865,139 - lysS NOLOHH_04750 0.15 -1.4 865,162 - lysS NOLOHH_04750 0.17 +0.1 865,196 + lysS NOLOHH_04750 0.19 -0.9 865,196 + lysS NOLOHH_04750 0.19 +0.3 865,196 + lysS NOLOHH_04750 0.19 -0.5 865,197 - lysS NOLOHH_04750 0.19 -0.1 865,197 - lysS NOLOHH_04750 0.19 -1.6 865,211 - lysS NOLOHH_04750 0.20 +2.5 865,229 + lysS NOLOHH_04750 0.21 +0.5 865,231 + lysS NOLOHH_04750 0.21 -0.9 865,231 + lysS NOLOHH_04750 0.21 +0.6 865,325 - lysS NOLOHH_04750 0.28 +0.1 865,354 - lysS NOLOHH_04750 0.30 +0.2 865,354 - lysS NOLOHH_04750 0.30 +0.1 865,354 - lysS NOLOHH_04750 0.30 +0.2 865,362 + lysS NOLOHH_04750 0.30 -0.4 865,369 + lysS NOLOHH_04750 0.31 +0.3 865,438 + lysS NOLOHH_04750 0.35 -0.4 865,521 + lysS NOLOHH_04750 0.41 -0.4 865,522 - lysS NOLOHH_04750 0.41 -0.1 865,543 - lysS NOLOHH_04750 0.42 +0.5 865,543 - lysS NOLOHH_04750 0.42 -0.2 865,599 + lysS NOLOHH_04750 0.46 -0.4 865,603 + lysS NOLOHH_04750 0.46 -0.5 865,603 + lysS NOLOHH_04750 0.46 +1.1 865,603 + lysS NOLOHH_04750 0.46 -1.3 865,603 + lysS NOLOHH_04750 0.46 +0.3 865,603 + lysS NOLOHH_04750 0.46 +0.8 865,603 + lysS NOLOHH_04750 0.46 -0.3 865,603 + lysS NOLOHH_04750 0.46 -2.3 865,603 + lysS NOLOHH_04750 0.46 +0.8 865,603 + lysS NOLOHH_04750 0.46 +0.3 865,603 + lysS NOLOHH_04750 0.46 +0.2 865,604 - lysS NOLOHH_04750 0.46 +0.7 865,604 - lysS NOLOHH_04750 0.46 -0.4 865,604 - lysS NOLOHH_04750 0.46 -0.5 865,604 - lysS NOLOHH_04750 0.46 +0.1 865,604 - lysS NOLOHH_04750 0.46 +0.2 865,604 - lysS NOLOHH_04750 0.46 +0.9 865,607 + lysS NOLOHH_04750 0.46 +1.2 865,607 + lysS NOLOHH_04750 0.46 +0.5 865,608 - lysS NOLOHH_04750 0.46 -0.2 865,608 - lysS NOLOHH_04750 0.46 -0.1 865,608 - lysS NOLOHH_04750 0.46 +1.5 865,608 - lysS NOLOHH_04750 0.46 +1.1 865,608 - lysS NOLOHH_04750 0.46 +0.3 865,608 - lysS NOLOHH_04750 0.46 -1.4 865,608 - lysS NOLOHH_04750 0.46 -0.1 865,631 + lysS NOLOHH_04750 0.48 -1.2 865,631 + lysS NOLOHH_04750 0.48 +1.8 865,650 + lysS NOLOHH_04750 0.49 -0.3
Or see this region's nucleotide sequence