Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjdC and Phe_trna are separated by 106 nucleotides Phe_trna and cadC are separated by 616 nucleotides cadC and cadB are separated by 365 nucleotides
NOLOHH_04720: yjdC - transcriptional regulator, at 856,313 to 856,888
yjdC
NOLOHH_04725: Phe_trna - tRNA-Phe(gaa), at 856,995 to 857,070
_trna
NOLOHH_04730: cadC - lysine decarboxylation/transport transcriptional activator CadC, at 857,687 to 859,225
cadC
NOLOHH_04735: cadB - cadaverine/lysine antiporter, at 859,591 to 860,925
cadB
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 856.780 kb on - strand, within yjdC at 856.924 kb on + strand at 856.952 kb on + strand at 857.079 kb on + strand at 857.241 kb on + strand at 857.241 kb on + strand at 857.242 kb on - strand at 857.410 kb on - strand at 857.425 kb on + strand at 857.425 kb on + strand at 857.426 kb on - strand at 857.426 kb on - strand at 857.428 kb on + strand at 857.551 kb on + strand at 857.607 kb on - strand at 857.620 kb on + strand at 857.620 kb on + strand at 857.620 kb on + strand at 857.620 kb on + strand at 857.620 kb on + strand at 857.621 kb on - strand at 857.621 kb on - strand at 857.622 kb on + strand at 857.623 kb on - strand at 857.623 kb on - strand at 857.623 kb on - strand at 857.623 kb on - strand at 857.686 kb on + strand at 857.726 kb on - strand at 857.826 kb on + strand at 857.826 kb on + strand at 857.827 kb on - strand at 857.827 kb on - strand at 857.827 kb on - strand at 857.830 kb on + strand at 857.831 kb on - strand at 857.831 kb on - strand at 857.869 kb on + strand, within cadC at 857.910 kb on + strand, within cadC at 857.911 kb on - strand, within cadC at 857.952 kb on - strand, within cadC at 857.954 kb on - strand, within cadC at 857.964 kb on + strand, within cadC at 858.030 kb on + strand, within cadC at 858.030 kb on + strand, within cadC at 858.031 kb on - strand, within cadC at 858.031 kb on - strand, within cadC at 858.036 kb on + strand, within cadC at 858.037 kb on - strand, within cadC at 858.140 kb on - strand, within cadC at 858.197 kb on - strand, within cadC at 858.197 kb on - strand, within cadC at 858.232 kb on + strand, within cadC at 858.232 kb on + strand, within cadC at 858.233 kb on - strand, within cadC at 858.244 kb on + strand, within cadC at 858.289 kb on + strand, within cadC at 858.290 kb on - strand, within cadC at 858.293 kb on - strand, within cadC at 858.302 kb on - strand, within cadC at 858.310 kb on + strand, within cadC at 858.379 kb on + strand, within cadC at 858.397 kb on + strand, within cadC at 858.419 kb on + strand, within cadC at 858.457 kb on - strand, within cadC at 858.460 kb on + strand, within cadC at 858.460 kb on + strand, within cadC at 858.461 kb on - strand, within cadC at 858.506 kb on - strand, within cadC at 858.506 kb on - strand, within cadC at 858.506 kb on - strand, within cadC at 858.560 kb on + strand, within cadC at 858.561 kb on - strand, within cadC at 858.700 kb on + strand, within cadC at 858.722 kb on + strand, within cadC at 858.769 kb on - strand, within cadC at 858.877 kb on - strand, within cadC at 858.940 kb on + strand, within cadC at 858.941 kb on - strand, within cadC at 858.942 kb on + strand, within cadC at 859.184 kb on + strand at 859.197 kb on - strand at 859.447 kb on - strand at 859.686 kb on - strand at 859.686 kb on - strand at 859.686 kb on - strand at 859.701 kb on + strand at 859.731 kb on + strand, within cadB at 859.731 kb on + strand, within cadB at 859.754 kb on - strand, within cadB at 859.754 kb on - strand, within cadB at 859.757 kb on + strand, within cadB at 859.757 kb on + strand, within cadB at 859.757 kb on + strand, within cadB at 859.757 kb on + strand, within cadB at 859.867 kb on - strand, within cadB at 859.934 kb on + strand, within cadB at 859.965 kb on + strand, within cadB at 859.986 kb on + strand, within cadB at 859.987 kb on - strand, within cadB at 859.994 kb on + strand, within cadB at 859.999 kb on - strand, within cadB at 859.999 kb on - strand, within cadB at 860.034 kb on + strand, within cadB at 860.034 kb on + strand, within cadB at 860.055 kb on + strand, within cadB at 860.111 kb on - strand, within cadB at 860.118 kb on + strand, within cadB at 860.213 kb on + strand, within cadB at 860.213 kb on + strand, within cadB at 860.213 kb on + strand, within cadB at 860.213 kb on + strand, within cadB at 860.214 kb on - strand, within cadB at 860.214 kb on - strand, within cadB at 860.214 kb on - strand, within cadB at 860.217 kb on + strand, within cadB at 860.218 kb on - strand, within cadB at 860.223 kb on + strand, within cadB at 860.224 kb on - strand, within cadB at 860.224 kb on - strand, within cadB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 856,780 - yjdC NOLOHH_04720 0.81 -0.3 856,924 + -0.9 856,952 + -1.3 857,079 + +0.3 857,241 + +0.3 857,241 + +0.3 857,242 - -2.5 857,410 - -0.1 857,425 + -0.1 857,425 + -0.5 857,426 - -2.8 857,426 - -1.1 857,428 + -0.2 857,551 + -0.6 857,607 - +1.8 857,620 + -1.2 857,620 + -0.7 857,620 + -1.5 857,620 + -1.1 857,620 + +0.9 857,621 - -0.6 857,621 - +0.5 857,622 + -1.8 857,623 - -0.1 857,623 - -1.1 857,623 - +0.5 857,623 - -1.5 857,686 + +1.0 857,726 - -0.5 857,826 + +0.3 857,826 + +0.5 857,827 - +1.5 857,827 - -0.5 857,827 - -2.0 857,830 + +1.0 857,831 - +0.8 857,831 - -0.8 857,869 + cadC NOLOHH_04730 0.12 +0.4 857,910 + cadC NOLOHH_04730 0.14 -0.9 857,911 - cadC NOLOHH_04730 0.15 +0.5 857,952 - cadC NOLOHH_04730 0.17 -0.9 857,954 - cadC NOLOHH_04730 0.17 +0.2 857,964 + cadC NOLOHH_04730 0.18 +0.3 858,030 + cadC NOLOHH_04730 0.22 +0.4 858,030 + cadC NOLOHH_04730 0.22 -1.1 858,031 - cadC NOLOHH_04730 0.22 +0.2 858,031 - cadC NOLOHH_04730 0.22 -1.1 858,036 + cadC NOLOHH_04730 0.23 +1.2 858,037 - cadC NOLOHH_04730 0.23 -0.2 858,140 - cadC NOLOHH_04730 0.29 +1.2 858,197 - cadC NOLOHH_04730 0.33 +0.6 858,197 - cadC NOLOHH_04730 0.33 -0.2 858,232 + cadC NOLOHH_04730 0.35 +0.5 858,232 + cadC NOLOHH_04730 0.35 +0.6 858,233 - cadC NOLOHH_04730 0.35 -0.7 858,244 + cadC NOLOHH_04730 0.36 -0.6 858,289 + cadC NOLOHH_04730 0.39 +0.5 858,290 - cadC NOLOHH_04730 0.39 +1.1 858,293 - cadC NOLOHH_04730 0.39 +0.2 858,302 - cadC NOLOHH_04730 0.40 +0.0 858,310 + cadC NOLOHH_04730 0.40 +0.0 858,379 + cadC NOLOHH_04730 0.45 -1.1 858,397 + cadC NOLOHH_04730 0.46 +0.1 858,419 + cadC NOLOHH_04730 0.48 +0.7 858,457 - cadC NOLOHH_04730 0.50 -0.2 858,460 + cadC NOLOHH_04730 0.50 -1.1 858,460 + cadC NOLOHH_04730 0.50 -0.5 858,461 - cadC NOLOHH_04730 0.50 +0.5 858,506 - cadC NOLOHH_04730 0.53 -0.4 858,506 - cadC NOLOHH_04730 0.53 +0.1 858,506 - cadC NOLOHH_04730 0.53 +0.5 858,560 + cadC NOLOHH_04730 0.57 -0.1 858,561 - cadC NOLOHH_04730 0.57 -0.4 858,700 + cadC NOLOHH_04730 0.66 +1.4 858,722 + cadC NOLOHH_04730 0.67 +0.5 858,769 - cadC NOLOHH_04730 0.70 -0.5 858,877 - cadC NOLOHH_04730 0.77 +0.3 858,940 + cadC NOLOHH_04730 0.81 +0.9 858,941 - cadC NOLOHH_04730 0.81 +0.1 858,942 + cadC NOLOHH_04730 0.82 -0.6 859,184 + +0.9 859,197 - -0.5 859,447 - +0.9 859,686 - +0.1 859,686 - +0.9 859,686 - +0.9 859,701 + +0.7 859,731 + cadB NOLOHH_04735 0.10 +0.3 859,731 + cadB NOLOHH_04735 0.10 +0.2 859,754 - cadB NOLOHH_04735 0.12 +0.0 859,754 - cadB NOLOHH_04735 0.12 +0.7 859,757 + cadB NOLOHH_04735 0.12 +0.1 859,757 + cadB NOLOHH_04735 0.12 -3.9 859,757 + cadB NOLOHH_04735 0.12 -0.2 859,757 + cadB NOLOHH_04735 0.12 -0.8 859,867 - cadB NOLOHH_04735 0.21 +0.5 859,934 + cadB NOLOHH_04735 0.26 +1.6 859,965 + cadB NOLOHH_04735 0.28 +0.7 859,986 + cadB NOLOHH_04735 0.30 -0.3 859,987 - cadB NOLOHH_04735 0.30 +0.3 859,994 + cadB NOLOHH_04735 0.30 +0.2 859,999 - cadB NOLOHH_04735 0.31 -0.2 859,999 - cadB NOLOHH_04735 0.31 +0.4 860,034 + cadB NOLOHH_04735 0.33 -0.3 860,034 + cadB NOLOHH_04735 0.33 +0.7 860,055 + cadB NOLOHH_04735 0.35 +0.0 860,111 - cadB NOLOHH_04735 0.39 +0.5 860,118 + cadB NOLOHH_04735 0.39 -0.1 860,213 + cadB NOLOHH_04735 0.47 -0.3 860,213 + cadB NOLOHH_04735 0.47 +0.3 860,213 + cadB NOLOHH_04735 0.47 -1.9 860,213 + cadB NOLOHH_04735 0.47 -0.3 860,214 - cadB NOLOHH_04735 0.47 -0.8 860,214 - cadB NOLOHH_04735 0.47 +0.3 860,214 - cadB NOLOHH_04735 0.47 +0.1 860,217 + cadB NOLOHH_04735 0.47 +0.1 860,218 - cadB NOLOHH_04735 0.47 +0.4 860,223 + cadB NOLOHH_04735 0.47 +0.2 860,224 - cadB NOLOHH_04735 0.47 +0.5 860,224 - cadB NOLOHH_04735 0.47 +0.7
Or see this region's nucleotide sequence