Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmA and frdA are separated by 324 nucleotides frdA and frdB overlap by 8 nucleotides frdB and NOLOHH_04615 are separated by 10 nucleotides
NOLOHH_04600: epmA - elongation factor P--(R)-beta-lysine ligase, at 834,721 to 835,698
epmA
NOLOHH_04605: frdA - fumarate reductase (quinol) flavoprotein subunit, at 836,023 to 837,831
frdA
NOLOHH_04610: frdB - fumarate reductase iron-sulfur protein, at 837,824 to 838,558
frdB
NOLOHH_04615: NOLOHH_04615 - Fumarate reductase subunit C, at 838,569 to 838,964
_04615
Position (kb) 836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 835.703 kb on - strand at 835.703 kb on - strand at 835.820 kb on + strand at 835.827 kb on + strand at 835.848 kb on + strand at 835.853 kb on + strand at 835.853 kb on + strand at 835.854 kb on - strand at 835.900 kb on + strand at 835.900 kb on + strand at 835.901 kb on - strand at 835.901 kb on - strand at 835.912 kb on + strand at 835.912 kb on + strand at 835.913 kb on - strand at 835.913 kb on - strand at 835.914 kb on + strand at 835.914 kb on + strand at 835.914 kb on + strand at 835.922 kb on + strand at 835.922 kb on + strand at 835.923 kb on - strand at 835.926 kb on + strand at 835.926 kb on + strand at 835.960 kb on + strand at 835.975 kb on + strand at 836.054 kb on + strand at 836.055 kb on - strand at 836.055 kb on - strand at 836.138 kb on + strand at 836.138 kb on + strand at 836.138 kb on + strand at 836.140 kb on + strand at 836.158 kb on - strand at 836.159 kb on - strand at 836.275 kb on + strand, within frdA at 836.275 kb on + strand, within frdA at 836.363 kb on + strand, within frdA at 836.363 kb on + strand, within frdA at 836.363 kb on + strand, within frdA at 836.364 kb on - strand, within frdA at 836.364 kb on - strand, within frdA at 836.427 kb on + strand, within frdA at 836.427 kb on + strand, within frdA at 836.428 kb on - strand, within frdA at 836.662 kb on - strand, within frdA at 836.675 kb on + strand, within frdA at 836.866 kb on + strand, within frdA at 836.866 kb on + strand, within frdA at 836.867 kb on - strand, within frdA at 836.867 kb on - strand, within frdA at 836.868 kb on + strand, within frdA at 836.868 kb on + strand, within frdA at 836.869 kb on - strand, within frdA at 836.869 kb on - strand, within frdA at 836.923 kb on - strand, within frdA at 837.037 kb on + strand, within frdA at 837.037 kb on + strand, within frdA at 837.037 kb on + strand, within frdA at 837.038 kb on - strand, within frdA at 837.038 kb on - strand, within frdA at 837.091 kb on + strand, within frdA at 837.091 kb on + strand, within frdA at 837.091 kb on + strand, within frdA at 837.092 kb on - strand, within frdA at 837.092 kb on - strand, within frdA at 837.345 kb on + strand, within frdA at 837.422 kb on - strand, within frdA at 837.535 kb on + strand, within frdA at 837.536 kb on - strand, within frdA at 837.576 kb on + strand, within frdA at 837.576 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.600 kb on + strand, within frdA at 837.735 kb on + strand at 837.735 kb on + strand at 837.735 kb on + strand at 837.735 kb on + strand at 837.736 kb on - strand at 837.736 kb on - strand at 837.738 kb on + strand at 837.738 kb on + strand at 837.739 kb on - strand at 837.753 kb on + strand at 837.764 kb on - strand at 837.808 kb on - strand at 837.863 kb on + strand at 837.864 kb on - strand at 837.902 kb on + strand, within frdB at 837.902 kb on + strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.903 kb on - strand, within frdB at 837.915 kb on - strand, within frdB at 837.925 kb on + strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.926 kb on - strand, within frdB at 837.950 kb on + strand, within frdB at 838.001 kb on - strand, within frdB at 838.057 kb on + strand, within frdB at 838.105 kb on - strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.108 kb on + strand, within frdB at 838.109 kb on - strand, within frdB at 838.109 kb on - strand, within frdB at 838.181 kb on + strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.182 kb on - strand, within frdB at 838.219 kb on + strand, within frdB at 838.220 kb on - strand, within frdB at 838.220 kb on - strand, within frdB at 838.250 kb on + strand, within frdB at 838.250 kb on + strand, within frdB at 838.251 kb on - strand, within frdB at 838.251 kb on - strand, within frdB at 838.251 kb on - strand, within frdB at 838.361 kb on + strand, within frdB at 838.400 kb on - strand, within frdB at 838.400 kb on - strand, within frdB at 838.439 kb on - strand, within frdB at 838.451 kb on + strand, within frdB at 838.584 kb on - strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.591 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.645 kb on - strand, within NOLOHH_04615 at 838.645 kb on - strand, within NOLOHH_04615
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 835,703 - +1.1 835,703 - +0.5 835,820 + +0.4 835,827 + -1.5 835,848 + +0.6 835,853 + +1.0 835,853 + -0.4 835,854 - -0.3 835,900 + +0.0 835,900 + -0.5 835,901 - -0.1 835,901 - -0.5 835,912 + +0.8 835,912 + -1.6 835,913 - -0.1 835,913 - +0.6 835,914 + +1.5 835,914 + -2.4 835,914 + -0.1 835,922 + +0.2 835,922 + +0.0 835,923 - -0.3 835,926 + -0.6 835,926 + -0.4 835,960 + -0.8 835,975 + -0.6 836,054 + +0.3 836,055 - +0.0 836,055 - -1.5 836,138 + -0.8 836,138 + +0.7 836,138 + +0.5 836,140 + -0.3 836,158 - -0.3 836,159 - +0.5 836,275 + frdA NOLOHH_04605 0.14 +0.5 836,275 + frdA NOLOHH_04605 0.14 +0.6 836,363 + frdA NOLOHH_04605 0.19 -1.5 836,363 + frdA NOLOHH_04605 0.19 +1.7 836,363 + frdA NOLOHH_04605 0.19 +0.3 836,364 - frdA NOLOHH_04605 0.19 -1.1 836,364 - frdA NOLOHH_04605 0.19 +0.2 836,427 + frdA NOLOHH_04605 0.22 -0.5 836,427 + frdA NOLOHH_04605 0.22 -0.0 836,428 - frdA NOLOHH_04605 0.22 -0.1 836,662 - frdA NOLOHH_04605 0.35 +0.3 836,675 + frdA NOLOHH_04605 0.36 -0.3 836,866 + frdA NOLOHH_04605 0.47 -1.8 836,866 + frdA NOLOHH_04605 0.47 -0.2 836,867 - frdA NOLOHH_04605 0.47 -0.8 836,867 - frdA NOLOHH_04605 0.47 +0.2 836,868 + frdA NOLOHH_04605 0.47 +0.8 836,868 + frdA NOLOHH_04605 0.47 -0.2 836,869 - frdA NOLOHH_04605 0.47 +1.0 836,869 - frdA NOLOHH_04605 0.47 -1.1 836,923 - frdA NOLOHH_04605 0.50 -0.5 837,037 + frdA NOLOHH_04605 0.56 +0.7 837,037 + frdA NOLOHH_04605 0.56 +0.3 837,037 + frdA NOLOHH_04605 0.56 -0.9 837,038 - frdA NOLOHH_04605 0.56 -0.3 837,038 - frdA NOLOHH_04605 0.56 -1.8 837,091 + frdA NOLOHH_04605 0.59 +0.5 837,091 + frdA NOLOHH_04605 0.59 -0.5 837,091 + frdA NOLOHH_04605 0.59 -0.2 837,092 - frdA NOLOHH_04605 0.59 -1.5 837,092 - frdA NOLOHH_04605 0.59 +0.3 837,345 + frdA NOLOHH_04605 0.73 +1.2 837,422 - frdA NOLOHH_04605 0.77 +0.0 837,535 + frdA NOLOHH_04605 0.84 -0.4 837,536 - frdA NOLOHH_04605 0.84 +0.5 837,576 + frdA NOLOHH_04605 0.86 -2.9 837,576 + frdA NOLOHH_04605 0.86 +1.1 837,600 + frdA NOLOHH_04605 0.87 -0.7 837,600 + frdA NOLOHH_04605 0.87 +0.5 837,600 + frdA NOLOHH_04605 0.87 +1.2 837,735 + -1.3 837,735 + -1.8 837,735 + +0.2 837,735 + +1.0 837,736 - -0.1 837,736 - -0.2 837,738 + +0.0 837,738 + -0.1 837,739 - -0.1 837,753 + -1.1 837,764 - -2.1 837,808 - -0.8 837,863 + -0.6 837,864 - +2.8 837,902 + frdB NOLOHH_04610 0.11 -0.5 837,902 + frdB NOLOHH_04610 0.11 +0.2 837,903 - frdB NOLOHH_04610 0.11 -1.8 837,903 - frdB NOLOHH_04610 0.11 -0.7 837,903 - frdB NOLOHH_04610 0.11 -0.1 837,903 - frdB NOLOHH_04610 0.11 -0.7 837,903 - frdB NOLOHH_04610 0.11 -0.3 837,915 - frdB NOLOHH_04610 0.12 -0.1 837,925 + frdB NOLOHH_04610 0.14 +1.1 837,926 - frdB NOLOHH_04610 0.14 +0.4 837,926 - frdB NOLOHH_04610 0.14 +2.5 837,926 - frdB NOLOHH_04610 0.14 +0.8 837,926 - frdB NOLOHH_04610 0.14 -0.5 837,926 - frdB NOLOHH_04610 0.14 +0.0 837,926 - frdB NOLOHH_04610 0.14 +1.7 837,926 - frdB NOLOHH_04610 0.14 -0.8 837,926 - frdB NOLOHH_04610 0.14 -0.7 837,950 + frdB NOLOHH_04610 0.17 -0.2 838,001 - frdB NOLOHH_04610 0.24 +1.0 838,057 + frdB NOLOHH_04610 0.32 +0.1 838,105 - frdB NOLOHH_04610 0.38 -0.9 838,108 + frdB NOLOHH_04610 0.39 +0.5 838,108 + frdB NOLOHH_04610 0.39 -0.6 838,108 + frdB NOLOHH_04610 0.39 -0.5 838,108 + frdB NOLOHH_04610 0.39 -0.2 838,109 - frdB NOLOHH_04610 0.39 -0.5 838,109 - frdB NOLOHH_04610 0.39 +0.4 838,181 + frdB NOLOHH_04610 0.49 +0.7 838,182 - frdB NOLOHH_04610 0.49 -0.2 838,182 - frdB NOLOHH_04610 0.49 -0.4 838,182 - frdB NOLOHH_04610 0.49 +0.9 838,182 - frdB NOLOHH_04610 0.49 -0.1 838,219 + frdB NOLOHH_04610 0.54 -0.3 838,220 - frdB NOLOHH_04610 0.54 +2.3 838,220 - frdB NOLOHH_04610 0.54 +0.5 838,250 + frdB NOLOHH_04610 0.58 -0.1 838,250 + frdB NOLOHH_04610 0.58 -1.6 838,251 - frdB NOLOHH_04610 0.58 +1.3 838,251 - frdB NOLOHH_04610 0.58 +0.5 838,251 - frdB NOLOHH_04610 0.58 -0.2 838,361 + frdB NOLOHH_04610 0.73 -0.1 838,400 - frdB NOLOHH_04610 0.78 -0.3 838,400 - frdB NOLOHH_04610 0.78 -0.2 838,439 - frdB NOLOHH_04610 0.84 +2.1 838,451 + frdB NOLOHH_04610 0.85 +0.1 838,584 - -0.7 838,590 + +0.9 838,590 + +0.8 838,590 + +0.5 838,590 + +0.0 838,590 + +0.0 838,591 - +1.0 838,594 + +0.7 838,594 + -0.8 838,595 - -0.5 838,595 - +0.5 838,595 - +0.5 838,645 - NOLOHH_04615 0.19 -0.4 838,645 - NOLOHH_04615 0.19 +0.3
Or see this region's nucleotide sequence