Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaR and yjfP overlap by 4 nucleotides yjfP and bsmA are separated by 181 nucleotides bsmA and yjfN are separated by 148 nucleotides yjfN and aidB are separated by 116 nucleotides
NOLOHH_04420: ulaR - HTH-type transcriptional regulator UlaR, at 800,443 to 801,198
ulaR
NOLOHH_04425: yjfP - esterase, at 801,195 to 801,944
yjfP
NOLOHH_04430: bsmA - biofilm peroxide resistance protein BsmA, at 802,126 to 802,455
bsmA
NOLOHH_04435: yjfN - protease activator YjfN, at 802,604 to 802,879
yjfN
NOLOHH_04440: aidB - isovaleryl-CoA dehydrogenase, at 802,996 to 804,621
aidB
Position (kb) 802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 801.231 kb on + strand at 801.232 kb on - strand at 801.246 kb on - strand at 801.327 kb on + strand, within yjfP at 801.327 kb on + strand, within yjfP at 801.328 kb on - strand, within yjfP at 801.378 kb on + strand, within yjfP at 801.379 kb on - strand, within yjfP at 801.446 kb on + strand, within yjfP at 801.515 kb on + strand, within yjfP at 801.515 kb on + strand, within yjfP at 801.515 kb on + strand, within yjfP at 801.516 kb on - strand, within yjfP at 801.516 kb on - strand, within yjfP at 801.663 kb on + strand, within yjfP at 801.663 kb on + strand, within yjfP at 801.663 kb on + strand, within yjfP at 801.663 kb on + strand, within yjfP at 801.664 kb on - strand, within yjfP at 801.664 kb on - strand, within yjfP at 801.664 kb on - strand, within yjfP at 801.683 kb on + strand, within yjfP at 801.811 kb on + strand, within yjfP at 801.811 kb on + strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.812 kb on - strand, within yjfP at 801.815 kb on + strand, within yjfP at 801.815 kb on + strand, within yjfP at 801.815 kb on + strand, within yjfP at 801.815 kb on + strand, within yjfP at 801.816 kb on - strand, within yjfP at 801.816 kb on - strand, within yjfP at 801.816 kb on - strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.817 kb on + strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.818 kb on - strand, within yjfP at 801.855 kb on + strand, within yjfP at 801.856 kb on - strand, within yjfP at 801.872 kb on + strand at 801.911 kb on + strand at 801.933 kb on + strand at 801.967 kb on - strand at 801.967 kb on - strand at 802.008 kb on - strand at 802.010 kb on + strand at 802.010 kb on + strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.018 kb on - strand at 802.018 kb on - strand at 802.110 kb on - strand at 802.112 kb on + strand at 802.121 kb on - strand at 802.125 kb on + strand at 802.125 kb on + strand at 802.125 kb on + strand at 802.125 kb on + strand at 802.126 kb on - strand at 802.126 kb on - strand at 802.144 kb on - strand at 802.144 kb on - strand at 802.144 kb on - strand at 802.146 kb on + strand at 802.146 kb on + strand at 802.152 kb on + strand at 802.152 kb on + strand at 802.153 kb on - strand at 802.153 kb on - strand at 802.156 kb on + strand at 802.156 kb on + strand at 802.172 kb on + strand, within bsmA at 802.190 kb on + strand, within bsmA at 802.190 kb on + strand, within bsmA at 802.191 kb on - strand, within bsmA at 802.191 kb on - strand, within bsmA at 802.284 kb on - strand, within bsmA at 802.293 kb on - strand, within bsmA at 802.378 kb on + strand, within bsmA at 802.381 kb on + strand, within bsmA at 802.381 kb on + strand, within bsmA at 802.382 kb on - strand, within bsmA at 802.382 kb on - strand, within bsmA at 802.382 kb on - strand, within bsmA at 802.382 kb on - strand, within bsmA at 802.426 kb on + strand at 802.444 kb on + strand at 802.450 kb on - strand at 802.450 kb on - strand at 802.453 kb on + strand at 802.454 kb on - strand at 802.467 kb on + strand at 802.467 kb on + strand at 802.467 kb on + strand at 802.468 kb on - strand at 802.468 kb on - strand at 802.468 kb on - strand at 802.468 kb on - strand at 802.468 kb on - strand at 802.468 kb on - strand at 802.471 kb on + strand at 802.472 kb on - strand at 802.472 kb on - strand at 802.472 kb on - strand at 802.481 kb on + strand at 802.481 kb on + strand at 802.482 kb on - strand at 802.499 kb on + strand at 802.507 kb on + strand at 802.520 kb on + strand at 802.520 kb on + strand at 802.548 kb on + strand at 802.614 kb on + strand at 802.614 kb on + strand at 802.614 kb on + strand at 802.614 kb on + strand at 802.614 kb on + strand at 802.614 kb on + strand at 802.615 kb on - strand at 802.615 kb on - strand at 802.615 kb on - strand at 802.639 kb on - strand, within yjfN at 802.639 kb on - strand, within yjfN at 802.646 kb on + strand, within yjfN at 802.646 kb on + strand, within yjfN at 802.646 kb on + strand, within yjfN at 802.647 kb on - strand, within yjfN at 802.717 kb on - strand, within yjfN at 802.732 kb on + strand, within yjfN at 802.738 kb on + strand, within yjfN at 802.738 kb on + strand, within yjfN at 802.739 kb on - strand, within yjfN at 802.768 kb on + strand, within yjfN at 802.769 kb on - strand, within yjfN at 802.809 kb on - strand, within yjfN at 802.816 kb on + strand, within yjfN at 802.817 kb on - strand, within yjfN at 802.819 kb on + strand, within yjfN at 802.820 kb on - strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.826 kb on + strand, within yjfN at 802.827 kb on - strand, within yjfN at 802.827 kb on - strand, within yjfN at 802.871 kb on + strand at 802.871 kb on + strand at 802.871 kb on + strand at 802.871 kb on + strand at 802.871 kb on + strand at 802.871 kb on + strand at 802.872 kb on - strand at 802.872 kb on - strand at 802.872 kb on - strand at 803.073 kb on + strand at 803.073 kb on + strand at 803.074 kb on - strand at 803.077 kb on + strand at 803.077 kb on + strand at 803.078 kb on - strand at 803.078 kb on - strand at 803.078 kb on - strand at 803.121 kb on - strand at 803.121 kb on - strand at 803.121 kb on - strand at 803.155 kb on + strand at 803.156 kb on - strand at 803.156 kb on - strand at 803.166 kb on + strand, within aidB at 803.167 kb on - strand, within aidB at 803.167 kb on - strand, within aidB at 803.278 kb on + strand, within aidB at 803.278 kb on + strand, within aidB at 803.279 kb on - strand, within aidB at 803.279 kb on - strand, within aidB at 803.286 kb on - strand, within aidB at 803.286 kb on - strand, within aidB at 803.331 kb on + strand, within aidB at 803.331 kb on + strand, within aidB at 803.331 kb on + strand, within aidB at 803.331 kb on + strand, within aidB at 803.331 kb on + strand, within aidB at 803.331 kb on + strand, within aidB at 803.332 kb on - strand, within aidB at 803.332 kb on - strand, within aidB at 803.332 kb on - strand, within aidB at 803.332 kb on - strand, within aidB at 803.332 kb on - strand, within aidB at 803.332 kb on - strand, within aidB at 803.334 kb on + strand, within aidB at 803.355 kb on + strand, within aidB at 803.356 kb on - strand, within aidB at 803.363 kb on - strand, within aidB at 803.455 kb on - strand, within aidB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 801,231 + -0.2 801,232 - -1.8 801,246 - -0.4 801,327 + yjfP NOLOHH_04425 0.18 -0.4 801,327 + yjfP NOLOHH_04425 0.18 -1.1 801,328 - yjfP NOLOHH_04425 0.18 -0.5 801,378 + yjfP NOLOHH_04425 0.24 +0.2 801,379 - yjfP NOLOHH_04425 0.25 -0.2 801,446 + yjfP NOLOHH_04425 0.33 -0.8 801,515 + yjfP NOLOHH_04425 0.43 -0.9 801,515 + yjfP NOLOHH_04425 0.43 -0.1 801,515 + yjfP NOLOHH_04425 0.43 +1.1 801,516 - yjfP NOLOHH_04425 0.43 -0.6 801,516 - yjfP NOLOHH_04425 0.43 +0.5 801,663 + yjfP NOLOHH_04425 0.62 +0.9 801,663 + yjfP NOLOHH_04425 0.62 +0.3 801,663 + yjfP NOLOHH_04425 0.62 -0.1 801,663 + yjfP NOLOHH_04425 0.62 +0.9 801,664 - yjfP NOLOHH_04425 0.63 +0.1 801,664 - yjfP NOLOHH_04425 0.63 +0.8 801,664 - yjfP NOLOHH_04425 0.63 -1.3 801,683 + yjfP NOLOHH_04425 0.65 -1.1 801,811 + yjfP NOLOHH_04425 0.82 +1.7 801,811 + yjfP NOLOHH_04425 0.82 +0.6 801,812 - yjfP NOLOHH_04425 0.82 -0.4 801,812 - yjfP NOLOHH_04425 0.82 +0.2 801,812 - yjfP NOLOHH_04425 0.82 -0.2 801,812 - yjfP NOLOHH_04425 0.82 +0.4 801,812 - yjfP NOLOHH_04425 0.82 -0.5 801,812 - yjfP NOLOHH_04425 0.82 +0.4 801,815 + yjfP NOLOHH_04425 0.83 +1.1 801,815 + yjfP NOLOHH_04425 0.83 +0.1 801,815 + yjfP NOLOHH_04425 0.83 -0.0 801,815 + yjfP NOLOHH_04425 0.83 -2.2 801,816 - yjfP NOLOHH_04425 0.83 +1.3 801,816 - yjfP NOLOHH_04425 0.83 +0.1 801,816 - yjfP NOLOHH_04425 0.83 -0.4 801,817 + yjfP NOLOHH_04425 0.83 +1.0 801,817 + yjfP NOLOHH_04425 0.83 +0.1 801,817 + yjfP NOLOHH_04425 0.83 -0.4 801,817 + yjfP NOLOHH_04425 0.83 -0.9 801,817 + yjfP NOLOHH_04425 0.83 +0.1 801,817 + yjfP NOLOHH_04425 0.83 -2.9 801,817 + yjfP NOLOHH_04425 0.83 -0.5 801,817 + yjfP NOLOHH_04425 0.83 -0.3 801,818 - yjfP NOLOHH_04425 0.83 +0.8 801,818 - yjfP NOLOHH_04425 0.83 +0.5 801,818 - yjfP NOLOHH_04425 0.83 +0.5 801,818 - yjfP NOLOHH_04425 0.83 +0.1 801,818 - yjfP NOLOHH_04425 0.83 -0.1 801,818 - yjfP NOLOHH_04425 0.83 +0.3 801,855 + yjfP NOLOHH_04425 0.88 -0.5 801,856 - yjfP NOLOHH_04425 0.88 +0.7 801,872 + -0.5 801,911 + +0.9 801,933 + -0.5 801,967 - +1.1 801,967 - +0.9 802,008 - -0.0 802,010 + -0.1 802,010 + +0.1 802,011 - +1.2 802,011 - -1.4 802,011 - -2.2 802,011 - +0.5 802,011 - +0.3 802,011 - +0.2 802,018 - -0.6 802,018 - -0.2 802,110 - -0.7 802,112 + -0.2 802,121 - +0.7 802,125 + +0.5 802,125 + -0.3 802,125 + +0.2 802,125 + +1.2 802,126 - +0.5 802,126 - -0.8 802,144 - +0.5 802,144 - -1.1 802,144 - -0.5 802,146 + -0.5 802,146 + +1.0 802,152 + -1.5 802,152 + -1.2 802,153 - +0.1 802,153 - +0.9 802,156 + +0.4 802,156 + -0.3 802,172 + bsmA NOLOHH_04430 0.14 -0.7 802,190 + bsmA NOLOHH_04430 0.19 -0.5 802,190 + bsmA NOLOHH_04430 0.19 +0.0 802,191 - bsmA NOLOHH_04430 0.20 +1.0 802,191 - bsmA NOLOHH_04430 0.20 -0.1 802,284 - bsmA NOLOHH_04430 0.48 -0.2 802,293 - bsmA NOLOHH_04430 0.51 +0.3 802,378 + bsmA NOLOHH_04430 0.76 -1.8 802,381 + bsmA NOLOHH_04430 0.77 +0.2 802,381 + bsmA NOLOHH_04430 0.77 +0.3 802,382 - bsmA NOLOHH_04430 0.78 -0.6 802,382 - bsmA NOLOHH_04430 0.78 +0.8 802,382 - bsmA NOLOHH_04430 0.78 -0.9 802,382 - bsmA NOLOHH_04430 0.78 -1.1 802,426 + -1.7 802,444 + +1.6 802,450 - -1.1 802,450 - +2.8 802,453 + -0.2 802,454 - +0.3 802,467 + -0.1 802,467 + +0.2 802,467 + +0.4 802,468 - +3.1 802,468 - +0.0 802,468 - -1.1 802,468 - -0.7 802,468 - +0.1 802,468 - -0.2 802,471 + -0.3 802,472 - +0.5 802,472 - +0.6 802,472 - -0.4 802,481 + +0.3 802,481 + +0.3 802,482 - +1.2 802,499 + -0.2 802,507 + -1.1 802,520 + +1.5 802,520 + -0.6 802,548 + +0.6 802,614 + +0.8 802,614 + -0.8 802,614 + -0.2 802,614 + -1.7 802,614 + -1.6 802,614 + +0.9 802,615 - -0.6 802,615 - -0.5 802,615 - +0.2 802,639 - yjfN NOLOHH_04435 0.13 -1.5 802,639 - yjfN NOLOHH_04435 0.13 -0.7 802,646 + yjfN NOLOHH_04435 0.15 -0.1 802,646 + yjfN NOLOHH_04435 0.15 -0.5 802,646 + yjfN NOLOHH_04435 0.15 -0.1 802,647 - yjfN NOLOHH_04435 0.16 +0.4 802,717 - yjfN NOLOHH_04435 0.41 +2.1 802,732 + yjfN NOLOHH_04435 0.46 +0.7 802,738 + yjfN NOLOHH_04435 0.49 +0.2 802,738 + yjfN NOLOHH_04435 0.49 +0.5 802,739 - yjfN NOLOHH_04435 0.49 +1.1 802,768 + yjfN NOLOHH_04435 0.59 -0.4 802,769 - yjfN NOLOHH_04435 0.60 -0.6 802,809 - yjfN NOLOHH_04435 0.74 -0.1 802,816 + yjfN NOLOHH_04435 0.77 +0.1 802,817 - yjfN NOLOHH_04435 0.77 -0.6 802,819 + yjfN NOLOHH_04435 0.78 +0.1 802,820 - yjfN NOLOHH_04435 0.78 +1.6 802,826 + yjfN NOLOHH_04435 0.80 +0.5 802,826 + yjfN NOLOHH_04435 0.80 -1.2 802,826 + yjfN NOLOHH_04435 0.80 -0.5 802,826 + yjfN NOLOHH_04435 0.80 -0.6 802,826 + yjfN NOLOHH_04435 0.80 -0.5 802,826 + yjfN NOLOHH_04435 0.80 -0.4 802,827 - yjfN NOLOHH_04435 0.81 -0.3 802,827 - yjfN NOLOHH_04435 0.81 +0.5 802,871 + +1.2 802,871 + +0.0 802,871 + +0.5 802,871 + -0.7 802,871 + -1.4 802,871 + +2.5 802,872 - +0.5 802,872 - +0.6 802,872 - +0.1 803,073 + -0.5 803,073 + +0.0 803,074 - +1.1 803,077 + -0.6 803,077 + +0.1 803,078 - +0.8 803,078 - +0.4 803,078 - +0.3 803,121 - -0.9 803,121 - +0.5 803,121 - +1.5 803,155 + -0.1 803,156 - -0.3 803,156 - -0.7 803,166 + aidB NOLOHH_04440 0.10 +0.5 803,167 - aidB NOLOHH_04440 0.11 -0.3 803,167 - aidB NOLOHH_04440 0.11 -1.2 803,278 + aidB NOLOHH_04440 0.17 +0.8 803,278 + aidB NOLOHH_04440 0.17 -0.4 803,279 - aidB NOLOHH_04440 0.17 +1.1 803,279 - aidB NOLOHH_04440 0.17 +1.3 803,286 - aidB NOLOHH_04440 0.18 +1.0 803,286 - aidB NOLOHH_04440 0.18 -0.0 803,331 + aidB NOLOHH_04440 0.21 -0.3 803,331 + aidB NOLOHH_04440 0.21 -0.7 803,331 + aidB NOLOHH_04440 0.21 -2.1 803,331 + aidB NOLOHH_04440 0.21 +0.0 803,331 + aidB NOLOHH_04440 0.21 -0.0 803,331 + aidB NOLOHH_04440 0.21 -0.8 803,332 - aidB NOLOHH_04440 0.21 -0.8 803,332 - aidB NOLOHH_04440 0.21 -0.9 803,332 - aidB NOLOHH_04440 0.21 -0.9 803,332 - aidB NOLOHH_04440 0.21 +0.5 803,332 - aidB NOLOHH_04440 0.21 -0.5 803,332 - aidB NOLOHH_04440 0.21 +0.7 803,334 + aidB NOLOHH_04440 0.21 -0.7 803,355 + aidB NOLOHH_04440 0.22 -1.1 803,356 - aidB NOLOHH_04440 0.22 -0.2 803,363 - aidB NOLOHH_04440 0.23 -1.5 803,455 - aidB NOLOHH_04440 0.28 -0.5
Or see this region's nucleotide sequence