Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rplI and rpsR are separated by 41 nucleotides rpsR and priB are separated by 4 nucleotides priB and rpsF are separated by 6 nucleotides rpsF and yjfY are separated by 326 nucleotides yjfY and ulaF are separated by 128 nucleotides
NOLOHH_04360: rplI - 50S ribosomal protein L9, at 792,340 to 792,789
rplI
NOLOHH_04365: rpsR - 30S ribosomal protein S18, at 792,831 to 793,058
rpsR
NOLOHH_04370: priB - primosomal replication protein N, at 793,063 to 793,377
priB
NOLOHH_04375: rpsF - 30S ribosomal protein S6, at 793,384 to 793,779
rpsF
NOLOHH_04380: yjfY - Uncharacterized protein YjfY, at 794,106 to 794,381
yjfY
NOLOHH_04385: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 794,510 to 795,196
ulaF
Position (kb) 793
794 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.482 kb on - strand, within rplI at 792.482 kb on - strand, within rplI at 792.791 kb on - strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.942 kb on - strand at 793.942 kb on - strand at 794.033 kb on - strand at 794.049 kb on - strand at 794.101 kb on + strand at 794.101 kb on + strand at 794.101 kb on + strand at 794.102 kb on - strand at 794.102 kb on - strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.106 kb on - strand at 794.106 kb on - strand at 794.106 kb on - strand at 794.156 kb on + strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.199 kb on - strand, within yjfY at 794.199 kb on - strand, within yjfY at 794.218 kb on + strand, within yjfY at 794.218 kb on + strand, within yjfY at 794.219 kb on - strand, within yjfY at 794.229 kb on + strand, within yjfY at 794.229 kb on + strand, within yjfY at 794.230 kb on - strand, within yjfY at 794.231 kb on + strand, within yjfY at 794.232 kb on - strand, within yjfY at 794.241 kb on - strand, within yjfY at 794.241 kb on - strand, within yjfY at 794.275 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.310 kb on + strand, within yjfY at 794.317 kb on + strand, within yjfY at 794.317 kb on + strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.351 kb on + strand, within yjfY at 794.370 kb on - strand at 794.373 kb on + strand at 794.373 kb on + strand at 794.374 kb on - strand at 794.389 kb on + strand at 794.390 kb on - strand at 794.411 kb on + strand at 794.411 kb on + strand at 794.411 kb on + strand at 794.412 kb on - strand at 794.466 kb on - strand at 794.474 kb on + strand at 794.511 kb on + strand at 794.512 kb on - strand at 794.526 kb on + strand at 794.527 kb on - strand at 794.527 kb on - strand at 794.546 kb on - strand at 794.546 kb on - strand at 794.560 kb on + strand at 794.602 kb on + strand, within ulaF at 794.722 kb on + strand, within ulaF at 794.722 kb on + strand, within ulaF at 794.723 kb on - strand, within ulaF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 792,482 - rplI NOLOHH_04360 0.32 -1.1 792,482 - rplI NOLOHH_04360 0.32 -1.1 792,791 - -1.1 793,941 + -1.8 793,941 + -0.3 793,941 + -1.0 793,941 + -1.1 793,941 + -0.1 793,942 - +0.8 793,942 - +0.1 794,033 - -0.2 794,049 - +0.7 794,101 + -0.7 794,101 + +1.2 794,101 + -0.5 794,102 - +0.4 794,102 - -1.1 794,105 + -0.1 794,105 + -0.6 794,105 + +0.7 794,105 + +1.1 794,105 + +0.4 794,105 + +0.5 794,105 + -0.4 794,106 - -0.5 794,106 - -0.3 794,106 - -1.0 794,156 + yjfY NOLOHH_04380 0.18 +0.7 794,157 - yjfY NOLOHH_04380 0.18 -1.0 794,157 - yjfY NOLOHH_04380 0.18 -0.1 794,157 - yjfY NOLOHH_04380 0.18 -1.1 794,198 + yjfY NOLOHH_04380 0.33 -0.7 794,198 + yjfY NOLOHH_04380 0.33 -0.2 794,198 + yjfY NOLOHH_04380 0.33 +0.5 794,198 + yjfY NOLOHH_04380 0.33 -0.5 794,199 - yjfY NOLOHH_04380 0.34 -0.1 794,199 - yjfY NOLOHH_04380 0.34 +0.1 794,218 + yjfY NOLOHH_04380 0.41 +0.5 794,218 + yjfY NOLOHH_04380 0.41 -0.2 794,219 - yjfY NOLOHH_04380 0.41 +0.2 794,229 + yjfY NOLOHH_04380 0.45 -1.4 794,229 + yjfY NOLOHH_04380 0.45 -0.4 794,230 - yjfY NOLOHH_04380 0.45 -0.6 794,231 + yjfY NOLOHH_04380 0.45 +0.0 794,232 - yjfY NOLOHH_04380 0.46 +0.5 794,241 - yjfY NOLOHH_04380 0.49 +2.5 794,241 - yjfY NOLOHH_04380 0.49 +1.9 794,275 + yjfY NOLOHH_04380 0.61 +0.7 794,307 + yjfY NOLOHH_04380 0.73 +0.9 794,307 + yjfY NOLOHH_04380 0.73 -0.5 794,307 + yjfY NOLOHH_04380 0.73 -1.3 794,307 + yjfY NOLOHH_04380 0.73 +0.1 794,308 - yjfY NOLOHH_04380 0.73 +2.1 794,308 - yjfY NOLOHH_04380 0.73 +0.0 794,308 - yjfY NOLOHH_04380 0.73 +0.5 794,308 - yjfY NOLOHH_04380 0.73 +0.5 794,308 - yjfY NOLOHH_04380 0.73 +0.2 794,308 - yjfY NOLOHH_04380 0.73 -0.7 794,308 - yjfY NOLOHH_04380 0.73 -0.3 794,310 + yjfY NOLOHH_04380 0.74 -0.5 794,317 + yjfY NOLOHH_04380 0.76 +0.4 794,317 + yjfY NOLOHH_04380 0.76 +0.2 794,318 - yjfY NOLOHH_04380 0.77 -1.1 794,318 - yjfY NOLOHH_04380 0.77 +0.3 794,318 - yjfY NOLOHH_04380 0.77 -0.0 794,351 + yjfY NOLOHH_04380 0.89 +1.0 794,370 - -0.0 794,373 + +0.1 794,373 + -0.3 794,374 - -0.1 794,389 + -0.1 794,390 - +0.5 794,411 + +0.3 794,411 + +0.5 794,411 + +0.1 794,412 - +0.1 794,466 - +0.2 794,474 + +0.1 794,511 + +0.1 794,512 - +0.3 794,526 + -0.6 794,527 - -0.3 794,527 - -1.0 794,546 - -1.1 794,546 - +0.2 794,560 + -1.5 794,602 + ulaF NOLOHH_04385 0.13 -1.3 794,722 + ulaF NOLOHH_04385 0.31 -1.4 794,722 + ulaF NOLOHH_04385 0.31 +2.1 794,723 - ulaF NOLOHH_04385 0.31 +2.5
Or see this region's nucleotide sequence